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[174329_s_at]

Description C33016_rc /REP_DB=TREMBL Accession /GB=C33016 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk338f5 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 58      4grp_high_8_8 > 44      6grp_total > 69      4grp_total > 51      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 269.2
(-0.4)
P 		353.2
(3)
P 		222.5
(-2.3)
P 		205.5
(-3)
A 		148
B 257.7
(0)
P 		343.2
(3)
P 		213.6
(-1.5)
P 		171.4
(-3)
P 		172
C 204.2
(-3)
P 		310.5
(1)
P 		363.2
(3)
P 		229.1
(-2.1)
P 		159
avr 243.7
(-1.1) 		335.6
(3) 		266.4
(-0.1) 		202
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 230.5
(1.2)
P 		270.9
(3)
P 		161.4
(-2)
P 		190.2
(-0.7)
P 		138.5
(-3)
P 		181.5
(-1.1)
P 		132
B 278.2
(2.3)
P 		244.8
(1)
P 		229.8
(0.4)
P 		147.5
(-3)
M 		225.6
(0.2)
P 		294.5
(3)
P 		147
C 178.8
(-1.3)
P 		136.4
(-3)
P 		202.4
(-0.4)
M 		210.3
(-0.1)
P 		266.2
(2.1)
P 		288.3
(3)
P 		152
avr 229.2
(0.9) 		217.4
(-0.1) 		197.9
(-1.7) 		182.7
(-3) 		210.1
(-0.7) 		254.8
(3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 98
(3)
P 		76.7
(1.1)
P 		58.2
(-0.5)
P 		30.1
(-3)
A 		68
B 82.2
(2.7)
P 		84.8
(3)
P 		49.5
(-1.4)
P 		36.5
(-3)
P 		48
C 67.6
(-1)
P 		89.3
(0.5)
P 		126.6
(3)
P 		38.6
(-3)
P 		88
avr 82.6
(2.9) 		83.6
(3) 		78.1
(2.3) 		35.1
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 42.5
(-2.3)
P 		96.4
(3)
P 		35.1
(-3)
P 		48.2
(-1.7)
P 		41.8
(-2.3)
P 		44.2
(-2.1)
P 		61
B 96.8
(1.9)
P 		81.5
(0.6)
P 		55.8
(-1.6)
P 		39.1
(-3)
M 		91.7
(1.5)
P 		109.8
(3)
P 		71
C 66.3
(-0.3)
P 		41.6
(-3)
P 		51.5
(-1.9)
M 		42.3
(-2.9)
P 		86.1
(1.9)
P 		96.5
(3)
P 		55
avr 68.5
(0.8) 		73.2
(1.5) 		47.5
(-2.4) 		43.2
(-3) 		73.2
(1.5) 		83.5
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174329_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21236
Sequence Type Exemplar sequence
Representative Public ID C33016 NCBI
Target Description C33016_rc /REP_DB=TREMBL Accession /GB=C33016 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk338f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064802 NCBI Caenorhabditis elegans Metaphase-to-Anaphase Transition defect family member (mat-3) (mat-3) mRNA, complete cds. 11/11 A 
SNAP00000005005 ENSEMBL cdna:SNAP chromosome:CEL140:III:475453:482236:1 11/11 None
GENEFINDER00000005006 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:475453:482236:1 11/11 None
F10C5.1.1 ENSEMBL cdna:known chromosome:CEL140:III:475452:482305:1 gene:F10C5.1 11/11 A 
F10C5.1.2 ENSEMBL cdna:known chromosome:CEL140:III:475453:482305:1 gene:F10C5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:481558-482244(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mat-3
Ensembl F10C5.1
Entrez Gene 175205 Entrez gene
SwissProt Q19294 EMBL-EBI
WormBase CE26888 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68876 Metaphase-to-anaphase transition defect protein 3 [Caenorhabditis elegans] ref|NP_497203.1| Metaphase-to-Anaphase Transition defect family member (mat-3) [Caenorhabditis elegans] 0.0
blast CAE67168 Hypothetical protein CBG12598 [Caenorhabditis briggsae] 0.0
blast CAE69171 Hypothetical protein CBG15203 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 2.7E-4
Pfam IPR001440 EMBL-EBI TPR repeat 3.0E-5
Pfam IPR001440 EMBL-EBI TPR repeat 1.1E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.013
Pfam IPR001440 EMBL-EBI TPR repeat 0.016
Pfam IPR001440 EMBL-EBI TPR repeat 3.0E-5
Pfam IPR001440 EMBL-EBI TPR repeat 1.1E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.013
Pfam IPR001440 EMBL-EBI TPR repeat 2.7E-4
Pfam IPR001440 EMBL-EBI TPR repeat 3.0E-5
Pfam IPR001440 EMBL-EBI TPR repeat 1.1E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.013
Sequence
Target Sequence 
>C. ELEGANS:174329_S_AT
gtttttggcgaatcatttcttcaaaattgaagatttcgataaagcctccgaatatgcaac
aaagtgtttggcttttgaaacgctatgtcaagaaggaaatcgtctgtttcgtgaaattgc
caaaattcaagcacgtgaatctcgattaccagtggaagaagccccgggaccatcgaatgc
aagtgctgctggcggacaagaagctatggatactgaagaagctccacaggaaggaggcga
agaggagatgtcagagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTTGGCGAATCATTTCTTCAAA 235 449 13 Antisense
GAAGATTTCGATAAAGCCTCCGAAT 138 337 41 Antisense
AAAGCCTCCGAATATGCAACAAAGT 686 123 53 Antisense
CGTCTGTTTCGTGAAATTGCCAAAA 379 245 113 Antisense
GAAATTGCCAAAATTCAAGCACGTG 671 363 125 Antisense
AGCACGTGAATCTCGATTACCAGTG 590 69 142 Antisense
GATTACCAGTGGAAGAAGCCCCGGG 491 429 156 Antisense
CCCGGGACCATCGAATGCAAGTGCT 343 257 175 Antisense
TGCAAGTGCTGCTGGCGGACAAGAA 176 577 190 Antisense
GAAGCTCCACAGGAAGGAGGCGAAG 654 341 230 Antisense
GGAGGCGAAGAGGAGATGTCAGAGG 569 515 245 Antisense
Sequence Source Affymetrix Proprietary Database