[Home] | [Total List]

[174328_at] Forkhead-associated (FHA) domain

Description C59439_rc /REP_DB=TREMBL Accession /GB=C59439 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk431a8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 57      6grp_total > 38      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2648
1 2 3 4 range
A 2859.4
(0.3)
P 		2011.9
(-3)
P 		2165.6
(-2.4)
P 		3533.8
(3)
P 		1522
B 2893.7
(-0.3)
P 		1921.6
(-2.5)
P 		1694.3
(-3)
P 		4342.2
(3)
P 		2648
C 2219.6
(-2)
P 		1951.7
(-3)
P 		2421.8
(-1.2)
P 		3521.7
(3)
P 		1570
avr 2657.6
(-0.7) 		1961.7
(-3) 		2093.9
(-2.6) 		3799.2
(3) 		1838

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1767
1 2 3 4 5 6 range
A 3174.8
(3)
P 		2423.7
(0.4)
P 		1472.3
(-3)
P 		2017
(-1.1)
P 		2834.6
(1.8)
P 		2604.5
(1)
P 		1703
B 2674.1
(2.2)
P 		2717.7
(2.4)
P 		1408.1
(-3)
P 		2426.9
(1.2)
P 		2360.5
(0.9)
P 		2876.5
(3)
P 		1468
C 2516
(2.7)
P 		2358.5
(0.9)
P 		2478.6
(2.3)
P 		2511.5
(2.6)
P 		2009
(-3)
P 		2542.9
(3)
P 		534
avr 2788.3
(3) 		2500
(1.3) 		1786.3
(-3) 		2318.5
(0.2) 		2401.4
(0.7) 		2674.6
(2.3) 		1002
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 649
1 2 3 4 range
A 1041.1
(3)
P 		436.7
(-3)
P 		566.1
(-1.7)
P 		517.3
(-2.2)
P 		604
B 922.8
(3)
P 		474.6
(-2.1)
P 		392.6
(-3)
P 		925.3
(3)
P 		533
C 734.7
(0.7)
P 		561.1
(-3)
P 		844.1
(3)
P 		593.8
(-2.3)
P 		283
avr 899.5
(3) 		490.8
(-3) 		600.9
(-1.4) 		678.8
(-0.2) 		409

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 752
1 2 3 4 5 6 range
A 585.3
(-0.1)
P 		862
(3)
P 		320.6
(-3)
P 		511.6
(-0.9)
P 		855.4
(2.9)
P 		634.1
(0.5)
P 		541
B 930.4
(1.8)
P 		904.6
(1.6)
P 		341.9
(-3)
P 		642.8
(-0.5)
P 		959
(2.1)
P 		1072.6
(3)
P 		731
C 932.6
(3)
P 		719.6
(0)
P 		630.8
(-1.2)
P 		505.1
(-3)
P 		650.1
(-1)
P 		851.3
(1.9)
P 		428
avr 816.1
(2.5) 		828.7
(2.7) 		431.1
(-3) 		553.2
(-1.3) 		821.5
(2.6) 		852.7
(3) 		422
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174328_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20585
Sequence Type Exemplar sequence
Representative Public ID C59439 NCBI
Target Description C59439_rc /REP_DB=TREMBL Accession /GB=C59439 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk431a8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063576(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063576 NCBI Caenorhabditis elegans C01G6.5 (C01G6.5) mRNA, complete cds. 11/11 None
C01G6.5 ENSEMBL cdna:known chromosome:CEL140:II:9274880:9280009:-1 gene:C01G6.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9274886-9275281(-) 100.0 100.0
Public Domain and Genome References
Gene Title Forkhead-associated (FHA) domain
Ensembl C01G6.5
Entrez Gene 174470 Entrez gene
SwissProt P46012 EMBL-EBI
WormBase CE00867 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84636 Hypothetical protein C01G6.5 [Caenorhabditis elegans] ref|NP_495977.1| C01G6.5 [Caenorhabditis elegans] sp|P46012|YKI5_CAEEL Hypothetical protein C01G6.5 in chromosome III 0.0
blast CAE57846 Hypothetical protein CBG00879 [Caenorhabditis briggsae] 8.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 5.3E-13
Sequence
Target Sequence 
>C. ELEGANS:174328_AT
gataatctagccggcgagattcccccatcatcccaacatcatcatcttttaccatcccaa
tgagtagtgtcgttttgttttcggtttatcttttttttttacaagtttaattctaatata
ctcaaccgattagcctaggataatgcagccaactgacttaaatttctcacttttccctct
caataactcgatattctttatcgaaatttgccttttttctgttcagatttcacatcaaaa
agaatggtgtcccccgaatctttgatattttgctaaaatttgtatttttcattactgttc
ggtgttcacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAATCTAGCCGGCGAGATTCCCC 93 423 32 Antisense
ACCATCCCAATGAGTAGTGTCGTTT 116 85 82 Antisense
TGAGTAGTGTCGTTTTGTTTTCGGT 573 561 92 Antisense
GTTTAATTCTAATATACTCAACCGA 413 433 136 Antisense
ATACTCAACCGATTAGCCTAGGATA 528 21 149 Antisense
GCCTAGGATAATGCAGCCAACTGAC 396 281 164 Antisense
CTTTTCCCTCTCAATAACTCGATAT 308 223 201 Antisense
CCCTCTCAATAACTCGATATTCTTT 581 259 206 Antisense
AAATTTGCCTTTTTTCTGTTCAGAT 26 117 235 Antisense
TGCCTTTTTTCTGTTCAGATTTCAC 576 585 240 Antisense
TTTTCATTACTGTTCGGTGTTCACG 212 677 317 Antisense
Sequence Source Affymetrix Proprietary Database