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[174327_at]

Description C52233_rc /REP_DB=TREMBL Accession /GB=C52233 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk227f8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 92      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 63      6grp_total > 84      4grp_total > 01      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 865
1 2 3 4 range
A 450.5
(-2.4)
P 		421.2
(-2.8)
P 		411.1
(-3)
P 		785.1
(3)
P 		374
B 364.5
(-2.5)
P 		289.5
(-3)
P 		411.7
(-2.2)
P 		1154.9
(3)
P 		865
C 413.3
(-2)
P 		316.2
(-3)
P 		606.2
(0)
P 		893.9
(3)
P 		578
avr 409.4
(-2.3) 		342.3
(-3) 		476.3
(-1.7) 		944.6
(3) 		602

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 798
1 2 3 4 5 6 range
A 258.4
(-3)
P 		637.1
(-0.2)
P 		613.1
(-0.3)
P 		618.7
(-0.3)
P 		1056.5
(3)
P 		730.6
(0.5)
P 		798
B 453.1
(-3)
P 		595
(-0.7)
P 		758.5
(1.9)
P 		740.1
(1.6)
P 		824.9
(3)
P 		794.2
(2.5)
P 		372
C 487.6
(-2.8)
P 		463.6
(-3)
P 		777.6
(0.2)
P 		836
(0.8)
P 		1045.8
(3)
P 		835.4
(0.8)
P 		582
avr 399.7
(-3) 		565.2
(-1.3) 		716.4
(0.3) 		731.6
(0.5) 		975.7
(3) 		786.7
(1) 		576
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 164
(3)
P 		91.4
(-3)
P 		107.5
(-1.7)
P 		114.9
(-1.1)
P 		73
B 116.2
(-1.5)
P 		71.5
(-3)
P 		95.4
(-2.2)
P 		246.1
(3)
P 		175
C 136.8
(-0.7)
P 		90.9
(-3)
P 		211.3
(3)
P 		150.7
(-0)
P 		120
avr 139
(0.8) 		84.6
(-3) 		138.1
(0.7) 		170.6
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 47.6
(-3)
P 		226.6
(1)
P 		133.5
(-1.1)
P 		156.9
(-0.6)
P 		318.8
(3)
P 		177.9
(-0.1)
P 		271
B 157.6
(-3)
P 		198.1
(-1.6)
P 		184.2
(-2.1)
P 		196
(-1.7)
P 		335.2
(3)
P 		296.1
(1.7)
P 		178
C 180.7
(-1.8)
P 		141.5
(-3)
P 		197.9
(-1.3)
P 		168.1
(-2.2)
P 		338.4
(3)
P 		279.7
(1.2)
P 		197
avr 128.6
(-3) 		188.7
(-1.2) 		171.9
(-1.7) 		173.7
(-1.7) 		330.8
(3) 		251.2
(0.6) 		202
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174327_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21759
Sequence Type Exemplar sequence
Representative Public ID C52233 NCBI
Target Description C52233_rc /REP_DB=TREMBL Accession /GB=C52233 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk227f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072209(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072209 NCBI Caenorhabditis elegans K12B6.1 (K12B6.1) mRNA, complete cds. 11/11 None
K12B6.1 ENSEMBL cdna:known chromosome:CEL140:V:6306393:6310877:1 gene:K12B6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6310546-6310832(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12B6.1
Entrez Gene 179016 Entrez gene
SwissProt O16386 EMBL-EBI
WormBase CE12164 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65916 Hypothetical protein K12B6.1 [Caenorhabditis elegans] ref|NP_504610.1| K12B6.1 [Caenorhabditis elegans] 0.0
blast AAF99978 Hypothetical protein F56A6.1a [Caenorhabditis elegans] ref|NP_490758.1| F56A6.1a [Caenorhabditis elegans] 0.0
blast AAO38667 Paz/piwi domain-containing protein 1, isoform c [Caenorhabditis elegans] ref|NP_491323.2| PAZ/PIWI domain-containing family member (ppw-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 5.6E-52
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174327_AT
accaaataattgtttcactgattttaaaaaatctgtttccctccttcttcattctccaac
tcattccttcaaacctattcgcctattgcctttttgcacttttctgctcaaaatctgaat
taatttccacctgtatttgttttgatgttccggaaaaggttccatgatttgccttaatac
tgacaggtttcattgtatttattaaaccgcattcctgtcagaacttactgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAAATAATTGTTTCACTGATTTT 303 85 27 Antisense
CTGAATTAATTTCCACCTGTATTTG 229 239 141 Antisense
AATTTCCACCTGTATTTGTTTTGAT 353 175 148 Antisense
ACCTGTATTTGTTTTGATGTTCCGG 634 87 155 Antisense
GATGTTCCGGAAAAGGTTCCATGAT 124 409 170 Antisense
GGTTCCATGATTTGCCTTAATACTG 267 507 184 Antisense
GATTTGCCTTAATACTGACAGGTTT 503 427 192 Antisense
TACTGACAGGTTTCATTGTATTTAT 499 645 204 Antisense
GTATTTATTAAACCGCATTCCTGTC 682 451 221 Antisense
AAACCGCATTCCTGTCAGAACTTAC 257 125 230 Antisense
CGCATTCCTGTCAGAACTTACTGTT 419 253 234 Antisense
Sequence Source Affymetrix Proprietary Database