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[174325_at]

Description CEC742_rc /REP_DB=TREMBL Accession /GB=C07742 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk158e6 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 45      4grp_high_8_8 > 29      6grp_total > 0      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 48.7
(-3)
A 		120.8
(-1.3)
P 		116.7
(-1.4)
P 		298.8
(3)
P 		250
B 83.8
(-3)
P 		212.2
(1.7)
P 		122.4
(-1.6)
P 		249
(3)
P 		165
C 50.7
(-3)
P 		267
(2.9)
P 		129.9
(-0.8)
P 		271.4
(3)
P 		221
avr 61.1
(-3) 		200
(0.9) 		123
(-1.2) 		273.1
(3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 39.8
(-3)
A 		102.3
(2.4)
P 		89.3
(1.3)
P 		48.9
(-2.2)
M 		72.3
(-0.2)
P 		109.3
(3)
P 		70
B 88.4
(-2.5)
P 		140.7
(3)
P 		83.6
(-3)
P 		127.1
(1.6)
P 		98.7
(-1.4)
P 		96.5
(-1.6)
P 		57
C 108.8
(1.3)
P 		128.2
(3)
P 		82.2
(-1)
P 		80.2
(-1.2)
A 		59.7
(-3)
P 		125.8
(2.8)
P 		69
avr 79
(-2.7) 		123.7
(3) 		85
(-2) 		85.4
(-1.9) 		76.9
(-3) 		110.5
(1.3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 17.7
(-3)
A 		26.2
(-1)
P 		30.5
(-0)
P 		43.7
(3)
P 		26
B 26.7
(-3)
P 		52.4
(2.8)
P 		28.4
(-2.6)
P 		53.1
(3)
P 		26
C 16.8
(-3)
P 		76.8
(3)
P 		45.3
(-0.2)
P 		45.8
(-0.1)
P 		60
avr 20.4
(-3) 		51.8
(3) 		34.7
(-0.3) 		47.5
(2.2) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 7.3
(-3)
A 		36.4
(3)
P 		19.5
(-0.5)
P 		12.4
(-1.9)
M 		21.8
(-0)
P 		26.6
(1)
P 		29
B 30.8
(-0.6)
P 		46.8
(3)
P 		20.3
(-3)
P 		33.7
(0)
P 		40.1
(1.5)
P 		36
(0.6)
P 		27
C 40.3
(2.6)
P 		39.1
(2.3)
P 		20.9
(-1.9)
P 		16.1
(-3)
A 		19.3
(-2.3)
P 		42.1
(3)
P 		26
avr 26.1
(-1.3) 		40.8
(3) 		20.2
(-3) 		20.7
(-2.9) 		27.1
(-1) 		34.9
(1.3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174325_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21231
Sequence Type Exemplar sequence
Representative Public ID CEC742 NCBI
Target Description CEC742_rc /REP_DB=TREMBL Accession /GB=C07742 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk158e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026010 NCBI Caenorhabditis elegans C24A1.2b (C24A1.2) mRNA, complete cds. 11/11 None
C24A1.2 ENSEMBL cdna:known chromosome:CEL140:III:706328:715834:1 gene:C24A1.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026009 1/11 Cross Hyb Matching Probes None
SNAP00000038340 1/11 Cross Hyb Matching Probes None
GENEFINDER00000038346 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175226 2 1 NM_001026010 174325_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:714569-715824(+) 92.58 100.0
Public Domain and Genome References
Ensembl C24A1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021181 C24A1.2b [Caenorhabditis elegans] 0.0
blast AAB70311 Hypothetical protein C24A1.2a [Caenorhabditis elegans] ref|NP_001021180.1| C24A1.2a [Caenorhabditis elegans] 1.0E-178
blast AAB70311 Hypothetical protein C24A1.2a [Caenorhabditis elegans] ref|NP_001021180.1| C24A1.2a [Caenorhabditis elegans] 1.0E-163
blast AAZ82855 Hypothetical protein C24A1.2b [Caenorhabditis elegans] 1.0E-163
blast NP_001021181 C24A1.2b [Caenorhabditis elegans] 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR000418 EMBL-EBI Ets-domain 8.8E-50
Pfam IPR000418 EMBL-EBI Ets-domain 8.8E-50
Sequence
Target Sequence 
>C. ELEGANS:174325_AT
gacgtggcaagtgaatgcgattcatcgtgtgaaagtgccgactcatgtgactctccaaaa
atcagtccgatatctctaaaactgatgcttcaacccgcaacttctgctagtgatgaagcc
taattgtacataaataactacttttcccgtacagaatttcatttatatatttcctggaac
aaaaaagaaaaaacagaaatatatacacatatatgtttccttccccggctttaaagtctt
tccctctttctattttccataattctctaatttacactgcccaatgctttctaaaatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTGGCAAGTGAATGCGATTCAT 535 377 59 Antisense
AGTGATGAAGCCTAATTGTACATAA 335 59 167 Antisense
TGTACATAAATAACTACTTTTCCCG 171 559 183 Antisense
CTACTTTTCCCGTACAGAATTTCAT 599 223 196 Antisense
GAATTTCATTTATATATTTCCTGGA 470 325 212 Antisense
ATACACATATATGTTTCCTTCCCCG 499 23 261 Antisense
TCCCTCTTTCTATTTTCCATAATTC 695 597 299 Antisense
CTTTCTATTTTCCATAATTCTCTAA 305 223 304 Antisense
AATTCTCTAATTTACACTGCCCAAT 461 177 319 Antisense
TAATTTACACTGCCCAATGCTTTCT 256 635 326 Antisense
CACTGCCCAATGCTTTCTAAAATAC 637 197 333 Antisense
Sequence Source Affymetrix Proprietary Database