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[174324_s_at]

Description C57525_rc /REP_DB=TREMBL Accession /GB=C57525 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk305a4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 16      4grp_high_8_8 > 61      6grp_highest_nonorm > 72      6grp_total > 53      4grp_total > 59      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 398
1 2 3 4 range
A 685
(0.3)
P 		860.3
(3)
P 		715.7
(0.8)
P 		471.6
(-3)
P 		389
B 563.3
(-1.9)
P 		698.2
(1)
P 		788.9
(3)
P 		515.1
(-3)
P 		274
C 676.4
(2)
P 		650.3
(1.4)
P 		716.8
(3)
P 		462.1
(-3)
P 		255
avr 641.6
(0.7) 		736.3
(2.9) 		740.5
(3) 		482.9
(-3) 		258

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 363.6
(-3)
P 		457.2
(2.1)
P 		474.3
(3)
P 		410.2
(-0.5)
P 		465.7
(2.5)
P 		405.4
(-0.7)
P 		111
B 475.9
(-0.7)
P 		422.3
(-3)
P 		564.7
(3)
P 		441.6
(-2.2)
P 		444.1
(-2.1)
P 		424
(-2.9)
P 		142
C 446.2
(0.1)
P 		369.6
(-2.2)
P 		543.4
(3)
P 		379.9
(-1.9)
P 		472.8
(0.9)
P 		344.4
(-3)
P 		199
avr 428.6
(-1.4) 		416.4
(-1.9) 		527.5
(3) 		410.6
(-2.1) 		460.9
(0.1) 		391.3
(-3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 249.4
(3)
P 		186.7
(0.9)
P 		187.1
(0.9)
P 		69
(-3)
P 		180
B 179.6
(2.7)
P 		172.4
(2.1)
P 		182.8
(3)
P 		109.8
(-3)
P 		73
C 223.9
(2.1)
P 		187
(0.8)
P 		249.8
(3)
P 		77.9
(-3)
P 		172
avr 217.6
(3) 		182
(1.4) 		206.6
(2.5) 		85.6
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 67
(-3)
P 		162.6
(3)
P 		103.3
(-0.7)
P 		104
(-0.7)
P 		140.5
(1.6)
P 		98.7
(-1)
P 		96
B 165.6
(1.6)
P 		140.6
(-0.8)
P 		137.1
(-1.1)
P 		117
(-3)
P 		180.4
(3)
P 		158.1
(0.9)
P 		63
C 165.4
(3)
P 		112.8
(-0.5)
P 		138.3
(1.2)
P 		76.4
(-3)
P 		153
(2.2)
P 		115.3
(-0.4)
P 		89
avr 132.7
(0.4) 		138.7
(1) 		126.2
(-0.2) 		99.1
(-3) 		158
(3) 		124
(-0.5) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174324_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20674
Sequence Type Exemplar sequence
Representative Public ID C57525 NCBI
Target Description C57525_rc /REP_DB=TREMBL Accession /GB=C57525 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk305a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062171(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062171 NCBI Caenorhabditis elegans W10G11.19 (W10G11.19) mRNA, complete cds. 11/11 None
SNAP00000013253 ENSEMBL cdna:SNAP chromosome:CEL140:II:3551699:3553389:1 11/11 None
GENEFINDER00000013278 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3550666:3553389:1 11/11 None
W10G11.19 ENSEMBL cdna:known chromosome:CEL140:II:3550648:3553431:1 gene:W10G11.19 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3553041-3553376(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10G11.19
Entrez Gene 173702 Entrez gene
SwissProt O44923 EMBL-EBI
WormBase CE30208 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK82922 Hypothetical protein W10G11.19 [Caenorhabditis elegans] ref|NP_494572.2| W10G11.19 [Caenorhabditis elegans] 0.0
blast D88104 protein W10G11.19 [imported] - Caenorhabditis elegans 0.0
blast CAE73809 Hypothetical protein CBG21359 [Caenorhabditis briggsae] 1.0E-180
blast CAE73809 Hypothetical protein CBG21359 [Caenorhabditis briggsae] 1.0E-178
blast D88104 protein W10G11.19 [imported] - Caenorhabditis elegans 1.0E-175
Sequence
Target Sequence 
>C. ELEGANS:174324_S_AT
cggtttcgacctgtttggactgtatgtgatgagcgtttttaatgtgaattccccgagcta
tattgtcattcggcgacaggaaaaaggatggtgcatccacacaaaacccgctgaaaacga
caatttcactggaattctttcatgggttcggaatttggagccagttcactgccaggagct
cattgaaaacttcaagttcccaattgctcgtttgaatctgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGTTTCGACCTGTTTGGACTGTAT 120 1 22 Antisense
GGACTGTATGTGATGAGCGTTTTTA 552 523 38 Antisense
GAGCGTTTTTAATGTGAATTCCCCG 561 385 52 Antisense
GAATTCCCCGAGCTATATTGTCATT 129 325 67 Antisense
AGGATGGTGCATCCACACAAAACCC 184 57 106 Antisense
TCCACACAAAACCCGCTGAAAACGA 472 587 117 Antisense
CACTGGAATTCTTTCATGGGTTCGG 704 197 148 Antisense
GGAATTTGGAGCCAGTTCACTGCCA 9 533 171 Antisense
CAGTTCACTGCCAGGAGCTCATTGA 224 205 183 Antisense
AACTTCAAGTTCCCAATTGCTCGTT 266 139 209 Antisense
CCCAATTGCTCGTTTGAATCTGTTG 664 257 220 Antisense
Sequence Source Affymetrix Proprietary Database