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[174322_s_at]

Description C55494_rc /REP_DB=TREMBL Accession /GB=C55494 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk191b5 : 3prime end, single read.
Cluster 6grp_total > 98      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 2.8
(-3)
A 		2.7
(-3)
A 		18
(-1.7)
A 		75.9
(3)
P 		73
B 4.3
(-3)
A 		26.1
(-1.5)
A 		52.8
(0.4)
A 		90
(3)
P 		86
C 6.2
(-2.8)
A 		3.5
(-3)
A 		44.6
(0.6)
A 		71.9
(3)
P 		68
avr 4.4
(-3) 		10.8
(-2.5) 		38.5
(-0.3) 		79.3
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 1.6
(-3)
A 		1.5
(-3)
A 		17.4
(-2.7)
A 		28.8
(-2.5)
A 		232.9
(0.9)
P 		359.2
(3)
P 		358
B 2.9
(-3)
A 		4.8
(-3)
A 		38.8
(-2.5)
A 		71.6
(-2.1)
P 		292.3
(0.8)
P 		457.9
(3)
P 		455
C 1.4
(-3)
A 		23.7
(-2.6)
A 		17.8
(-2.7)
A 		55.8
(-2.1)
A 		291.8
(1.8)
P 		365.1
(3)
P 		364
avr 2
(-3) 		10
(-2.9) 		24.7
(-2.7) 		52.1
(-2.2) 		272.3
(1.1) 		394.1
(3) 		392
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 1
(-2.8)
A 		0.6
(-3)
A 		4.7
(-0.7)
A 		11.1
(3)
P 		11
B 1.4
(-3)
A 		6.5
(-1.3)
A 		12.2
(0.6)
A 		19.2
(3)
P 		18
C 2.1
(-2.5)
A 		1
(-3)
A 		15.5
(3)
A 		12.1
(1.6)
P 		15
avr 1.5
(-3) 		2.7
(-2.4) 		10.8
(1.4) 		14.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.5
(-3)
A 		3.8
(-2.8)
A 		7.3
(-2.5)
A 		70.3
(1.8)
P 		87.5
(3)
P 		87
B 1
(-3)
A 		1.6
(-3)
A 		9.4
(-2.7)
A 		19
(-2.4)
P 		118.7
(1.2)
P 		170.8
(3)
P 		170
C 0.5
(-3)
A 		7.2
(-2.7)
A 		4.5
(-2.8)
A 		11.2
(-2.5)
A 		94.4
(1.6)
P 		122.2
(3)
P 		122
avr 0.6
(-3) 		3.1
(-2.9) 		5.9
(-2.7) 		12.5
(-2.4) 		94.5
(1.5) 		126.8
(3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174322_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21986
Sequence Type Exemplar sequence
Representative Public ID C55494 NCBI
Target Description C55494_rc /REP_DB=TREMBL Accession /GB=C55494 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk191b5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070769(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070769 NCBI Caenorhabditis elegans F33E11.2 (F33E11.2) mRNA, complete cds. 11/11 A 
SNAP00000030180 ENSEMBL cdna:SNAP chromosome:CEL140:V:297778:312685:1 11/11 None
GENEFINDER00000030188 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:297778:299711:1 11/11 None
F33E11.2 ENSEMBL cdna:known chromosome:CEL140:V:296427:299769:1 gene:F33E11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:298593-299759(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33E11.2
Entrez Gene 178555 Entrez gene
SwissProt O61852 EMBL-EBI
WormBase CE28293 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17543 Hypothetical protein F33E11.2 [Caenorhabditis elegans] ref|NP_503170.1| F33E11.2 [Caenorhabditis elegans] 1.0E-170
blast AAC17543 Hypothetical protein F33E11.2 [Caenorhabditis elegans] ref|NP_503170.1| F33E11.2 [Caenorhabditis elegans] 1.0E-117
blast AAC17543 Hypothetical protein F33E11.2 [Caenorhabditis elegans] ref|NP_503170.1| F33E11.2 [Caenorhabditis elegans] 1.0E-113
Sequence
Target Sequence 
>C. ELEGANS:174322_S_AT
ggaattgtgcggaactccatgcaaaatcaaggcggaacccgaggacgaggacattatcat
tctgaagcatattgcaccgaataccgatggtggtgtaaaacgtgtcggaagtagaaataa
gattggaaagcgatcccagaagctcaaaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATTGTGCGGAACTCCATGCAAA 153 535 37 Antisense
GGAACTCCATGCAAAATCAAGGCGG 460 529 47 Antisense
ATCAAGGCGGAACCCGAGGACGAGG 540 25 62 Antisense
GGAACCCGAGGACGAGGACATTATC 41 531 70 Antisense
GACGAGGACATTATCATTCTGAAGC 484 379 80 Antisense
ATCATTCTGAAGCATATTGCACCGA 249 31 92 Antisense
GAAGCATATTGCACCGAATACCGAT 500 341 100 Antisense
ATTGCACCGAATACCGATGGTGGTG 568 3 107 Antisense
GATGGTGGTGTAAAACGTGTCGGAA 693 407 122 Antisense
GATTGGAAAGCGATCCCAGAAGCTC 595 435 157 Antisense
AAGCGATCCCAGAAGCTCAAAACTC 603 149 164 Antisense
Sequence Source Affymetrix Proprietary Database