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[174321_s_at]

Description C58823_rc /REP_DB=TREMBL Accession /GB=C58823 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384g3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 08      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 76      6grp_total > 09      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1292
1 2 3 4 range
A 828.2
(-3)
P 		979.4
(-2.3)
P 		965.8
(-2.4)
P 		2119.9
(3)
P 		1292
B 1046.7
(-2.4)
P 		947.1
(-3)
P 		1028.4
(-2.5)
P 		2000.4
(3)
P 		1053
C 954.3
(-2.9)
P 		929.7
(-3)
P 		986.4
(-2.7)
P 		2108.1
(3)
P 		1178
avr 943.1
(-3) 		952.1
(-3) 		993.5
(-2.7) 		2076.1
(3) 		1133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 1175.9
(3)
P 		980.7
(-1.4)
P 		994.7
(-1.1)
P 		947.3
(-2.1)
P 		1063.8
(0.5)
P 		907.5
(-3)
P 		268
B 1156.4
(3)
P 		876.1
(-1.9)
P 		1080.6
(1.7)
P 		1093.3
(1.9)
P 		1125
(2.5)
P 		812.3
(-3)
P 		344
C 945.8
(-0.7)
P 		1089.3
(2.2)
P 		960.5
(-0.4)
P 		1073.3
(1.9)
P 		836
(-3)
P 		1128.3
(3)
P 		292
avr 1092.7
(3) 		982
(-1.6) 		1011.9
(-0.4) 		1038
(0.7) 		1008.3
(-0.5) 		949.4
(-3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 301.5
(2.5)
P 		212.6
(-3)
P 		252.5
(-0.5)
P 		310.3
(3)
P 		98
B 333.8
(0.1)
P 		233.9
(-3)
P 		238.3
(-2.9)
P 		426.3
(3)
P 		192
C 315.9
(0.3)
P 		267.3
(-3)
P 		343.8
(2.2)
P 		355.5
(3)
P 		88
avr 317.1
(0.8) 		237.9
(-3) 		278.2
(-1.1) 		364
(3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 216.8
(-3)
P 		348.8
(3)
P 		216.6
(-3)
P 		240.3
(-1.9)
P 		321
(1.7)
P 		221
(-2.8)
P 		132
B 402.4
(1.3)
P 		291.6
(-2.1)
P 		262.4
(-3)
P 		289.6
(-2.2)
P 		457.1
(3)
P 		302.9
(-1.8)
P 		195
C 350.6
(2)
P 		332.4
(1.3)
P 		244.5
(-1.9)
P 		215.8
(-3)
P 		270.5
(-1)
P 		377.7
(3)
P 		162
avr 323.3
(1.5) 		324.3
(1.6) 		241.2
(-3) 		248.6
(-2.6) 		349.5
(3) 		300.5
(0.3) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174321_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20103
Sequence Type Exemplar sequence
Representative Public ID C58823 NCBI
Target Description C58823_rc /REP_DB=TREMBL Accession /GB=C58823 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058472(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058472 NCBI Caenorhabditis elegans Y73E7A.1 (Y73E7A.1) mRNA, complete cds. 11/11 A 
Y73E7A.1 ENSEMBL cdna:known chromosome:CEL140:I:1629004:1633494:1 gene:Y73E7A.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005643 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1630714-1633443(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73E7A.1
Entrez Gene 171725 Entrez gene
SwissProt Q9GUM1 EMBL-EBI
WormBase CE27033 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262710_AT expressed protein at
ATGENOME1:15457_AT expressed protein at
CANINE:1604200_AT similar to Y73E7A.1 cfa
CANINE_2:CFA.20371.1.S1_S_AT similar to Y73E7A.1 cfa
DROSOPHILA_2:1635247_AT dm
DROSGENOME1:152282_AT dm
CHICKEN:GGAAFFX.1658.1.S1_AT similar to hypothetical protein BC013949 gga
U133_X3P:HS.100043.0.S1_3P_AT hypothetical protein BC013949 hs
HU35KSUBC:RC_N58138_AT hypothetical protein BC013949 hs
HG-U133_PLUS_2:225454_AT hypothetical protein BC013949 hs
HG-U133B:225454_AT hypothetical protein BC013949 hs
HG-U95C:61259_AT hypothetical protein BC013949 hs
HG-U133_PLUS_2:225453_X_AT Hypothetical protein BC013949 hs
HG-U133B:225453_X_AT Hypothetical protein BC013949 hs
HG-U95B:45579_AT Hypothetical protein BC013949 hs
HG-U95B:56116_AT Hypothetical protein BC013949 hs
HU35KSUBD:RC_AA458913_AT Hypothetical protein BC013949 hs
U133_X3P:HS.100043.0.A1_3P_AT Hypothetical protein BC013949 hs
MG-U74BV2:113613_AT RIKEN cDNA 1810023B24 gene mm
MOE430B:1428605_AT RIKEN cDNA 1810023B24 gene mm
MOUSE430_2:1428605_AT RIKEN cDNA 1810023B24 gene mm
MOE430B:1428606_AT RIKEN cDNA 1810023B24 gene mm
MOUSE430_2:1428606_AT RIKEN cDNA 1810023B24 gene mm
MU19KSUBA:TC16466_AT RIKEN cDNA 1810023B24 gene (1810023B24Rik), mRNA mm
RG-U34A:RC_AA685974_AT similar to hypothetical protein BC013949 (predicted) rn
RAE230A:1373965_AT similar to hypothetical protein BC013949 (predicted) rn
RAT230_2:1373965_AT similar to hypothetical protein BC013949 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAG23390 Hypothetical protein Y73E7A.1 [Caenorhabditis elegans] ref|NP_490873.1| Y73E7A.1 [Caenorhabditis elegans] 5.0E-69
blast CAE74431 Hypothetical protein CBG22164 [Caenorhabditis briggsae] 5.0E-56
blast XP_424681 PREDICTED: similar to hypothetical protein BC013949 [Gallus gallus] 4.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR010422 EMBL-EBI Protein of unknown function DUF1014 9.1E-124
Sequence
Target Sequence 
>C. ELEGANS:174321_S_AT
gaagctcggctccccgagctaaaactgaatcatccaacgttccgcctgtcgcaattgaag
caaattctcaagaaagaatggcaaaaatcgccggaaaatccgctcaacgctcgtcttctg
gctctcaactcctaaatacatatggaccataatttcctatttgcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCGGCTCCCCGAGCTAAAAC 8 343 92 Antisense
CCCGAGCTAAAACTGAATCATCCAA 394 261 104 Antisense
AAAACTGAATCATCCAACGTTCCGC 82 131 112 Antisense
TTCCGCCTGTCGCAATTGAAGCAAA 108 699 131 Antisense
GCCTGTCGCAATTGAAGCAAATTCT 366 283 135 Antisense
GTCGCAATTGAAGCAAATTCTCAAG 380 475 139 Antisense
TTCTGGCTCTCAACTCCTAAATACA 360 695 207 Antisense
CTGGCTCTCAACTCCTAAATACATA 226 241 209 Antisense
GGCTCTCAACTCCTAAATACATATG 438 537 211 Antisense
AACTCCTAAATACATATGGACCATA 397 139 218 Antisense
TGGACCATAATTTCCTATTTGCCCC 157 547 234 Antisense
Sequence Source Affymetrix Proprietary Database