[Home] | [Total List]

[174320_at]

Description C36715_rc /REP_DB=TREMBL Accession /GB=C36715 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk471e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 77      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 88      6grp_total > 78      4grp_total > 01      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1020
1 2 3 4 range
A 815.6
(-3)
P 		997.7
(-1.9)
P 		951.1
(-2.2)
P 		1796.8
(3)
P 		981
B 939.8
(-2.5)
P 		891.4
(-3)
P 		938.2
(-2.5)
P 		1474.3
(3)
P 		583
C 837.4
(-2.5)
P 		776.9
(-3)
P 		1030.4
(-1)
P 		1524.6
(3)
P 		748
avr 864.3
(-3) 		888.7
(-2.8) 		973.2
(-2.1) 		1598.6
(3) 		734

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1016
1 2 3 4 5 6 range
A 1141.9
(-1.2)
P 		1183.4
(-0.8)
P 		961.7
(-2.7)
P 		924.8
(-3)
P 		1540.3
(2.2)
P 		1638
(3)
P 		713
B 1026.8
(-3)
P 		1486
(0.5)
P 		1265.3
(-1.2)
P 		1265.5
(-1.2)
P 		1316.2
(-0.8)
P 		1814
(3)
P 		787
C 908.4
(-3)
P 		1318.1
(-0.6)
P 		1033.5
(-2.3)
P 		1223
(-1.1)
P 		1333
(-0.5)
P 		1924
(3)
P 		1016
avr 1025.7
(-3) 		1329.2
(-0.6) 		1086.8
(-2.5) 		1137.8
(-2.1) 		1396.5
(-0.1) 		1792
(3) 		766
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 297
(3)
P 		216.6
(-3)
P 		248.6
(-0.6)
P 		263
(0.5)
P 		80
B 299.7
(2.1)
P 		220.2
(-2.8)
P 		217.4
(-3)
P 		314.2
(3)
P 		97
C 277.2
(-0.6)
P 		223.4
(-3)
P 		359.1
(3)
P 		257.1
(-1.5)
P 		136
avr 291.3
(3) 		220.1
(-3) 		275
(1.6) 		278.1
(1.9) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 467
1 2 3 4 5 6 range
A 210.5
(-3)
P 		420.9
(2)
P 		209.4
(-3)
P 		234.6
(-2.4)
P 		464.8
(3)
P 		398.8
(1.4)
P 		255
B 357.3
(-2.2)
P 		494.6
(0)
P 		307.3
(-3)
P 		335.2
(-2.5)
P 		534.8
(0.7)
P 		676.4
(3)
P 		369
C 336.7
(-1.6)
P 		402.2
(-0.6)
P 		263
(-2.7)
P 		245.9
(-3)
P 		431.3
(-0.2)
P 		644.1
(3)
P 		398
avr 301.5
(-2.2) 		439.2
(0.4) 		259.9
(-3) 		271.9
(-2.8) 		477
(1.2) 		573.1
(3) 		313
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174320_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20235
Sequence Type Exemplar sequence
Representative Public ID C36715 NCBI
Target Description C36715_rc /REP_DB=TREMBL Accession /GB=C36715 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk471e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T23D8.1 ENSEMBL cdna:known chromosome:CEL140:I:9973709:9978082:1 gene:T23D8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9977724-9978003(+) 100.0 100.0
Public Domain and Genome References
Ensembl T23D8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03398 Hypothetical protein T23D8.1 [Caenorhabditis elegans] ref|NP_492635.1| More Of MS family member (mom-5) [Caenorhabditis elegans] gb|AAC47750.1| mom-5 gene product [Caenorhabditis elegans] 0.0
blast CAE60250 Hypothetical protein CBG03824 [Caenorhabditis briggsae] 0.0
blast XP_685530 PREDICTED: similar to 7-transmembrane receptor frizzled-1 [Danio rerio] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR000539 EMBL-EBI Frizzled protein 1.0E-126
Pfam IPR000024 EMBL-EBI Frizzled CRD region 7.9E-77
Trans Membrane
ID Number Of Domains Domain Boundaries
T23D8.1 7 229-251,263-282,314-336,349-371,396-418,446-468,514-536
Sequence
Target Sequence 
>C. ELEGANS:174320_AT
gaacccccttcaattcaggttactgtagatcagttctctcgctgccatttttcatgtatc
tcgtttattcatgttcttaagttctgttgtcaccagctccagcacaaggttcacacactt
tttttcacactttgagcactccaatcagggtaaaaccactttcatcccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCCCCTTCAATTCAGGTTACTG 84 319 91 Antisense
TACTGTAGATCAGTTCTCTCGCTGC 444 647 111 Antisense
TCTCGCTGCCATTTTTCATGTATCT 352 611 127 Antisense
TGTATCTCGTTTATTCATGTTCTTA 129 561 145 Antisense
CATGTTCTTAAGTTCTGTTGTCACC 125 211 160 Antisense
TTAAGTTCTGTTGTCACCAGCTCCA 43 685 167 Antisense
CTCCAGCACAAGGTTCACACACTTT 618 235 187 Antisense
CACACACTTTTTTTCACACTTTGAG 187 195 202 Antisense
CACACTTTGAGCACTCCAATCAGGG 308 189 216 Antisense
GAGCACTCCAATCAGGGTAAAACCA 442 387 224 Antisense
CAGGGTAAAACCACTTTCATCCCAG 53 55 236 Antisense
Sequence Source Affymetrix Proprietary Database