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[174319_at]

Description C53572_rc /REP_DB=TREMBL Accession /GB=C53572 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk321c3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 75      6grp_total > 99      4grp_total > 53      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 322
1 2 3 4 range
A 698.4
(3)
P 		475.4
(-3)
P 		591.2
(0.1)
P 		534.3
(-1.4)
P 		223
B 520.9
(-0.1)
P 		648.6
(3)
P 		403.9
(-3)
P 		414.6
(-2.7)
P 		245
C 725.7
(3)
P 		643.4
(1.2)
P 		716.4
(2.8)
P 		450.5
(-3)
P 		275
avr 648.3
(3) 		589.1
(1) 		570.5
(0.4) 		466.5
(-3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 484
1 2 3 4 5 6 range
A 984.6
(2.2)
P 		880.1
(0.2)
P 		711.8
(-3)
P 		771.5
(-1.9)
P 		954.2
(1.6)
P 		1029.2
(3)
P 		317
B 712.7
(-0.8)
P 		844.6
(1)
P 		545
(-3)
P 		807.7
(0.5)
P 		995.3
(3)
P 		977.3
(2.8)
P 		450
C 875.6
(0.5)
P 		732.8
(-3)
P 		874.3
(0.5)
P 		763.2
(-2.2)
P 		936
(2)
P 		974.3
(3)
P 		242
avr 857.6
(0.1) 		819.2
(-0.7) 		710.4
(-3) 		780.8
(-1.5) 		961.8
(2.3) 		993.6
(3) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 254.3
(3)
P 		103.2
(-2.1)
P 		154.6
(-0.4)
P 		78.2
(-3)
P 		176
B 166.1
(3)
P 		160.2
(2.5)
P 		93.6
(-2.6)
P 		88.3
(-3)
P 		78
C 240.2
(2.7)
P 		185
(0.8)
P 		249.7
(3)
P 		76
(-3)
P 		174
avr 220.2
(3) 		149.5
(-0) 		166
(0.7) 		80.8
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 181.5
(-2)
P 		313
(3)
P 		155
(-3)
P 		195.7
(-1.5)
P 		287.9
(2)
P 		250.6
(0.6)
P 		158
B 248
(-0.4)
P 		281.1
(0.3)
P 		132.3
(-3)
P 		213.9
(-1.2)
P 		404.4
(3)
P 		364.4
(2.1)
P 		272
C 324.6
(2.9)
P 		223.6
(-0.6)
P 		222.5
(-0.6)
P 		153.5
(-3)
P 		302.9
(2.2)
P 		326.1
(3)
P 		173
avr 251.4
(0) 		272.6
(0.8) 		169.9
(-3) 		187.7
(-2.3) 		331.7
(3) 		313.7
(2.3) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174319_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21640
Sequence Type Exemplar sequence
Representative Public ID C53572 NCBI
Target Description C53572_rc /REP_DB=TREMBL Accession /GB=C53572 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk321c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068447(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068447 NCBI Caenorhabditis elegans C55C3.5 (C55C3.5) mRNA, complete cds. 11/11 None
C55C3.5 ENSEMBL cdna:known chromosome:CEL140:IV:5695769:5703453:-1 gene:C55C3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5695838-5696119(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C55C3.5
Entrez Gene 177348 Entrez gene
SwissProt Q18867 EMBL-EBI
WormBase CE29735 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500848 C55C3.5 [Caenorhabditis elegans] gb|AAA96171.2| Hypothetical protein C55C3.5 [Caenorhabditis elegans] 0.0
blast CAE72664 Hypothetical protein CBG19878 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174319_AT
gaaaatttatcagctcacacctctccaaatccttgccatttacatacattgccatcatcg
cttgatccgtttttttttcaataattttcctaaaaaacttgttgttttcactcaattccc
ctttgccacgtgtttcatgggttttatcactaatacgtgtattctcttctacgcaacatc
atcatcagtttcccccaatcccaatcaaatatatgcttataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATTTATCAGCTCACACCTCTC 588 353 20 Antisense
TCTCCAAATCCTTGCCATTTACATA 17 611 41 Antisense
TCCTTGCCATTTACATACATTGCCA 63 593 49 Antisense
TACATACATTGCCATCATCGCTTGA 310 643 60 Antisense
TCATCGCTTGATCCGTTTTTTTTTC 694 621 74 Antisense
CCCCTTTGCCACGTGTTTCATGGGT 689 261 137 Antisense
GTTTCATGGGTTTTATCACTAATAC 208 449 151 Antisense
CTAATACGTGTATTCTCTTCTACGC 57 227 169 Antisense
GTATTCTCTTCTACGCAACATCATC 459 453 178 Antisense
TCTTCTACGCAACATCATCATCAGT 317 617 184 Antisense
ATCCCAATCAAATATATGCTTATAA 50 39 217 Antisense
Sequence Source Affymetrix Proprietary Database