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[174318_s_at]

Description C54007_rc /REP_DB=TREMBL Accession /GB=C54007 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk354a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 84      6grp_total > 49      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 538
1 2 3 4 range
A 746.7
(1.7)
P 		464.7
(-2.2)
P 		410.8
(-3)
P 		836.8
(3)
P 		426
B 832.7
(2.3)
P 		363.5
(-3)
P 		373.6
(-2.9)
P 		893.3
(3)
P 		530
C 800.5
(1.7)
P 		449.3
(-2.7)
P 		425.8
(-3)
P 		901.8
(3)
P 		476
avr 793.3
(1.9) 		425.8
(-2.7) 		403.4
(-3) 		877.3
(3) 		474

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 689.8
(1.7)
P 		492.6
(-3)
P 		612.6
(-0.1)
P 		511.3
(-2.6)
P 		634.8
(0.4)
P 		743.4
(3)
P 		251
B 838.4
(3)
P 		674.3
(0.1)
P 		496
(-3)
P 		566.8
(-1.8)
P 		649.6
(-0.3)
P 		715.4
(0.8)
P 		342
C 641.8
(-1)
P 		569.9
(-2.4)
P 		581.9
(-2.1)
P 		537.6
(-3)
P 		621.7
(-1.4)
P 		845
(3)
P 		307
avr 723.3
(1.8) 		578.9
(-1.9) 		563.5
(-2.3) 		538.6
(-3) 		635.4
(-0.5) 		767.9
(3) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 271.9
(3)
P 		100.9
(-3)
P 		107.4
(-2.8)
P 		122.5
(-2.2)
P 		171
B 265.5
(3)
P 		89.8
(-2.9)
P 		86.6
(-3)
P 		190.4
(0.5)
P 		179
C 265
(3)
P 		129.2
(-3)
P 		148.4
(-2.2)
P 		152.1
(-2)
P 		136
avr 267.5
(3) 		106.6
(-3) 		114.1
(-2.7) 		155
(-1.2) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 127.2
(-3)
P 		175.2
(1.5)
P 		133.4
(-2.4)
P 		129.7
(-2.8)
P 		191.5
(3)
P 		181
(2)
P 		64
B 291.7
(3)
P 		224.5
(0.6)
P 		120.4
(-3)
P 		150.1
(-2)
P 		263.9
(2)
P 		266.8
(2.1)
P 		171
C 237.9
(1.5)
P 		173.9
(-0.7)
P 		148.1
(-1.6)
P 		108.1
(-3)
P 		201.2
(0.2)
P 		282.9
(3)
P 		175
avr 218.9
(1.7) 		191.2
(0.2) 		134
(-2.8) 		129.3
(-3) 		218.9
(1.7) 		243.6
(3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174318_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20676
Sequence Type Exemplar sequence
Representative Public ID C54007 NCBI
Target Description C54007_rc /REP_DB=TREMBL Accession /GB=C54007 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk354a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061546(11), NM_061547(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061546 NCBI Caenorhabditis elegans F56D12.6a (F56D12.6) mRNA, complete cds. 11/11 A 
NM_061547 NCBI Caenorhabditis elegans F56D12.6b (F56D12.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000013810 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1311270:1320260:1 11/11 None
F56D12.6a ENSEMBL cdna:known chromosome:CEL140:II:1310541:1320431:1 gene:F56D12.6 11/11 None
F56D12.6b ENSEMBL cdna:known chromosome:CEL140:II:1311220:1320260:1 gene:F56D12.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013796 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1320049-1320371(+) 100.0 100.0
Public Domain and Genome References
Ensembl F56D12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD47126 Hypothetical protein F56D12.6a [Caenorhabditis elegans] ref|NP_493947.1| F56D12.6a [Caenorhabditis elegans] 0.0
blast AAB66120 Hypothetical protein F56D12.6b [Caenorhabditis elegans] ref|NP_493948.1| F56D12.6b [Caenorhabditis elegans] 0.0
blast CAE62915 Hypothetical protein CBG07108 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001060 EMBL-EBI Cdc15/Fes/CIP4 0.0022
Sequence
Target Sequence 
>C. ELEGANS:174318_S_AT
tttcagtgcctggaagccaatctatctggagtggacatttccctagtgcaatcggatatt
tatcacctgtctatgattcgtaaaaaggtgctcgctggtaaatatttttgtgatcccgag
ctgcggaaatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCAGTGCCTGGAAGCCAATCTAT 159 671 28 Antisense
AGTGCCTGGAAGCCAATCTATCTGG 314 59 32 Antisense
TGGAGTGGACATTTCCCTAGTGCAA 228 549 54 Antisense
GACATTTCCCTAGTGCAATCGGATA 312 369 61 Antisense
CAATCGGATATTTATCACCTGTCTA 382 181 76 Antisense
TTATCACCTGTCTATGATTCGTAAA 337 679 87 Antisense
GATTCGTAAAAAGGTGCTCGCTGGT 659 431 102 Antisense
GGTGCTCGCTGGTAAATATTTTTGT 487 501 114 Antisense
GTAAATATTTTTGTGATCCCGAGCT 225 461 125 Antisense
TATTTTTGTGATCCCGAGCTGCGGA 271 663 130 Antisense
TTGTGATCCCGAGCTGCGGAAATAG 272 709 135 Antisense
Sequence Source Affymetrix Proprietary Database