[Home] | [Total List]

[174317_at]

Description C53851_rc /REP_DB=TREMBL Accession /GB=C53851 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk324a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 91      6grp_total > 89      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 271.5
(2)
P 		101.7
(-3)
P 		185.7
(-0.5)
P 		304.7
(3)
P 		203
B 297
(-1.3)
P 		252.6
(-2.6)
P 		236.5
(-3)
P 		455.6
(3)
P 		219
C 197.1
(-3)
P 		198.9
(-2.9)
P 		223.2
(-2.2)
P 		399.1
(3)
P 		202
avr 255.2
(-0.9) 		184.4
(-3) 		215.1
(-2.1) 		386.5
(3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 298.4
(0.6)
P 		181.7
(-2.1)
P 		145.9
(-3)
P 		166.3
(-2.5)
P 		333.7
(1.5)
P 		398.1
(3)
P 		252
B 268.4
(1)
P 		182.5
(-1.4)
P 		123.4
(-3)
P 		267.7
(1)
P 		341.6
(3)
P 		325.6
(2.6)
P 		218
C 188.4
(-1.6)
P 		208.1
(-1.1)
P 		137.7
(-3)
P 		160
(-2.4)
P 		284.1
(1.1)
P 		354.4
(3)
P 		217
avr 251.7
(0.1) 		190.8
(-1.5) 		135.7
(-3) 		198
(-1.3) 		319.8
(1.9) 		359.4
(3) 		224
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 98.9
(3)
P 		22.1
(-3)
P 		48.5
(-0.9)
P 		44.6
(-1.2)
P 		77
B 94.7
(2.7)
P 		62.4
(-1.9)
P 		54.8
(-3)
P 		97.1
(3)
P 		42
C 65.2
(-0.7)
P 		57.2
(-3)
P 		77.8
(3)
P 		67.3
(-0.1)
P 		21
avr 86.3
(3) 		47.2
(-3) 		60.4
(-1) 		69.7
(0.5) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 55
(-1)
P 		64.6
(-0.1)
P 		31.8
(-3)
P 		42.2
(-2.1)
P 		100.7
(3)
P 		96.9
(2.7)
P 		69
B 93.4
(0.5)
P 		60.7
(-1.3)
P 		30
(-3)
P 		70.9
(-0.7)
P 		138.8
(3)
P 		121.4
(2)
P 		109
C 69.8
(-0.4)
P 		63.5
(-0.8)
P 		35.1
(-2.8)
P 		32.2
(-3)
P 		91.9
(1.1)
P 		118.6
(3)
P 		86
avr 72.7
(0) 		62.9
(-0.7) 		32.3
(-3) 		48.4
(-1.8) 		110.5
(2.9) 		112.3
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174317_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21935
Sequence Type Exemplar sequence
Representative Public ID C53851 NCBI
Target Description C53851_rc /REP_DB=TREMBL Accession /GB=C53851 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk324a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074013(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074013 NCBI Caenorhabditis elegans F53C11.4 (F53C11.4) mRNA, complete cds. 11/11 None
F53C11.4.1 ENSEMBL cdna:known chromosome:CEL140:V:13786692:13789753:-1 gene:F53C11.4 11/11 None
F53C11.4.2 ENSEMBL cdna:known chromosome:CEL140:V:13786692:13790301:-1 gene:F53C11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13786755-13787043(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53C11.4
Entrez Gene 179873 Entrez gene
SwissProt Q93762 EMBL-EBI
WormBase CE17853 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02121 Hypothetical protein F53C11.4 [Caenorhabditis elegans] ref|NP_506414.1| F53C11.4 [Caenorhabditis elegans] 0.0
blast CAE66239 Hypothetical protein CBG11483 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174317_AT
ttctctgtcaaacttttgtaatatatttcttgggatccttctcacttcctcctctctatc
tccacagctggttttgtttcgatcactgaaaaagtacaaacgattccttctgaacttttc
caatcatctacccattttcttctattttatcctcgaagttcaccagccttgttcccattt
tctaaatttcggtgtttacactttttcccttttttttcatttttcttcatctaatctttg
tatcctcagtttcgtgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCTGTCAAACTTTTGTAATATA 679 691 13 Antisense
GTAATATATTTCTTGGGATCCTTCT 394 463 30 Antisense
ATATTTCTTGGGATCCTTCTCACTT 654 19 35 Antisense
TCTCTATCTCCACAGCTGGTTTTGT 322 613 65 Antisense
CTCCACAGCTGGTTTTGTTTCGATC 501 235 72 Antisense
TTTGTTTCGATCACTGAAAAAGTAC 353 651 85 Antisense
TTTCTTCTATTTTATCCTCGAAGTT 311 671 148 Antisense
TATTTTATCCTCGAAGTTCACCAGC 571 659 155 Antisense
TTCTTCATCTAATCTTTGTATCCTC 269 691 235 Antisense
ATCTAATCTTTGTATCCTCAGTTTC 626 31 241 Antisense
ATCTTTGTATCCTCAGTTTCGTGTT 585 29 246 Antisense
Sequence Source Affymetrix Proprietary Database