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[174316_at]

Description C53377_rc /REP_DB=TREMBL Accession /GB=C53377 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk315a9 : 3prime end, single read.
Cluster 6grp_total > 42      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 6.2
(-2.4)
A 		22.2
(3)
A 		4.5
(-3)
A 		7.4
(-2)
A 		18
B 2.1
(-3)
A 		7.3
(3)
A 		6.2
(1.7)
A 		2.3
(-2.8)
A 		5
C 21.2
(1.8)
A 		11.9
(-0.9)
A 		5
(-3)
A 		25.1
(3)
A 		20
avr 9.8
(0.2) 		13.8
(3) 		5.2
(-3) 		11.6
(1.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 11.4
(3)
A 		4
(-1.4)
A 		6.2
(-0.1)
A 		3.8
(-1.6)
A 		5.1
(-0.8)
A 		1.4
(-3)
A 		10
B 5.6
(-2.5)
A 		5.3
(-2.6)
A 		34.8
(3)
A 		4.8
(-2.7)
A 		3.2
(-3)
A 		3.1
(-3)
A 		32
C 5.4
(-2.1)
A 		19.4
(3)
A 		5.5
(-2.1)
A 		11.1
(-0)
A 		14.6
(1.3)
A 		2.9
(-3)
A 		17
avr 7.5
(-0.7) 		9.6
(0.3) 		15.5
(3) 		6.6
(-1.1) 		7.6
(-0.6) 		2.5
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.3
(-1.1)
A 		4.8
(3)
A 		1.2
(-2.8)
A 		1.1
(-3)
A 		4
B 0.7
(-2.1)
A 		1.8
(3)
A 		1.4
(1.2)
A 		0.5
(-3)
A 		1
C 7
(3)
A 		3.4
(-1.1)
A 		1.7
(-3)
A 		4.2
(-0.2)
A 		5
avr 3.3
(3) 		3.3
(3) 		1.4
(-3) 		1.9
(-1.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.1
(3)
A 		1.4
(0.7)
A 		1.4
(0.7)
A 		1
(-0.7)
A 		1.6
(1.3)
A 		0.3
(-3)
A 		2
B 1.9
(-2.4)
A 		1.7
(-2.6)
A 		8.5
(3)
A 		1.3
(-2.9)
A 		1.3
(-2.9)
A 		1.2
(-3)
A 		7
C 2
(-1.8)
A 		5.9
(3)
A 		1.4
(-2.5)
A 		2.2
(-1.5)
A 		4.7
(1.5)
A 		1
(-3)
A 		5
avr 2
(-0.6) 		3
(1.4) 		3.8
(3) 		1.5
(-1.6) 		2.5
(0.4) 		0.8
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174316_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22459
Sequence Type Exemplar sequence
Representative Public ID C53377 NCBI
Target Description C53377_rc /REP_DB=TREMBL Accession /GB=C53377 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk315a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C53377
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C53377 C53377_rc /REP_DB=TREMBL Accession /GB=C53377 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk315a9 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075684 11/11 Negative Strand Matching Probes A 
NM_001029695 11/11 Negative Strand Matching Probes None
NM_182448 11/11 Negative Strand Matching Probes None
R57.1a 11/11 Negative Strand Matching Probes None
R57.1b.2 11/11 Negative Strand Matching Probes None
R57.1b.1 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:303664-303930(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174316_AT
tcccttgctcttgaatacttcttttccagccgacgactttattataacagaatttggatt
ttcaaagtcaggatacgacagcaaaacttcatacggtaatgtgtgaacatcttccaatcc
tgcttccgaccacgcatttgcaatttcgtaagcgacttttttgttagcttctgttccagc
tacatgtggatcttttgtgaatattcggaggtactttttgatgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCTTGCTCTTGAATACTTCTTTT 182 599 13 Antisense
GCTCTTGAATACTTCTTTTCCAGCC 323 301 19 Antisense
TCTTTTCCAGCCGACGACTTTATTA 196 615 32 Antisense
ACGACAGCAAAACTTCATACGGTAA 288 91 87 Antisense
ATGTGTGAACATCTTCCAATCCTGC 379 47 111 Antisense
CTTCCGACCACGCATTTGCAATTTC 253 217 135 Antisense
GCATTTGCAATTTCGTAAGCGACTT 34 309 146 Antisense
GCGACTTTTTTGTTAGCTTCTGTTC 615 289 164 Antisense
AGCTTCTGTTCCAGCTACATGTGGA 556 77 178 Antisense
GTGGATCTTTTGTGAATATTCGGAG 677 489 198 Antisense
ATATTCGGAGGTACTTTTTGATGTT 534 17 213 Antisense
Sequence Source Affymetrix Proprietary Database