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[174315_at]

Description C58309_rc /REP_DB=TREMBL Accession /GB=C58309 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk364f5 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 92      4grp_high_8_8 > 15      6grp_total > 94      4grp_total > 02      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 493
1 2 3 4 range
A 63.3
(-2.7)
P 		40.8
(-3)
A 		71.8
(-2.6)
M 		534.2
(3)
P 		493
B 43.8
(-3)
A 		89.2
(-2.4)
A 		127.3
(-1.9)
P 		486
(3)
P 		442
C 96.1
(-2.5)
A 		61.4
(-3)
P 		62.5
(-3)
A 		504
(3)
P 		443
avr 67.7
(-2.9) 		63.8
(-3) 		87.2
(-2.7) 		508.1
(3) 		444

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 108.1
(-2.8)
P 		99.1
(-3)
P 		181.5
(-1.2)
P 		294.4
(1.3)
P 		372.7
(3)
P 		195
(-0.9)
P 		274
B 74.1
(-3)
A 		78.9
(-2.9)
P 		126.7
(-1.7)
P 		249.8
(1.4)
P 		312.5
(3)
P 		200.7
(0.2)
P 		238
C 82.6
(-3)
P 		110.6
(-2.3)
P 		150.3
(-1.4)
P 		173.4
(-0.8)
P 		335.1
(3)
P 		215
(0.1)
P 		253
avr 88.3
(-3) 		96.2
(-2.8) 		152.8
(-1.5) 		239.2
(0.6) 		340.1
(3) 		203.6
(-0.3) 		252
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 23
(-1.8)
P 		8.9
(-3)
A 		18.8
(-2.1)
M 		78.2
(3)
P 		69
B 14
(-3)
A 		22
(-2.5)
A 		29.5
(-2)
P 		103.6
(3)
P 		90
C 31.8
(-1.7)
A 		17.7
(-3)
P 		21.8
(-2.6)
A 		85
(3)
P 		67
avr 22.9
(-2.4) 		16.2
(-3) 		23.4
(-2.4) 		88.9
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 19.9
(-3)
P 		35.3
(-2)
P 		39.5
(-1.7)
P 		74.7
(0.6)
P 		112.5
(3)
P 		47.5
(-1.2)
P 		93
B 25.8
(-3)
A 		26.3
(-3)
P 		30.8
(-2.7)
P 		66.2
(-0.6)
P 		127
(3)
P 		74.9
(-0.1)
P 		101
C 30.6
(-3)
P 		33.7
(-2.8)
P 		38.3
(-2.4)
P 		34.9
(-2.7)
P 		108.4
(3)
P 		72
(0.2)
P 		78
avr 25.4
(-3) 		31.8
(-2.6) 		36.2
(-2.3) 		58.6
(-0.8) 		116
(3) 		64.8
(-0.4) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174315_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20464
Sequence Type Exemplar sequence
Representative Public ID C58309 NCBI
Target Description C58309_rc /REP_DB=TREMBL Accession /GB=C58309 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk364f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058342 NCBI Caenorhabditis elegans Y65B4BL.7 (Y65B4BL.7) mRNA, complete cds. 11/11 None
SNAP00000040878 ENSEMBL cdna:SNAP chromosome:CEL140:I:508975:509864:-1 11/11 None
GENEFINDER00000040883 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:508975:511202:-1 11/11 None
Y65B4BL.7 ENSEMBL cdna:known chromosome:CEL140:I:508975:510840:-1 gene:Y65B4BL.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y65B4BL.2.1 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:509025-509352(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y65B4BL.7
Entrez Gene 3564829 Entrez gene
SwissProt Q95XU4 EMBL-EBI
WormBase CE36756 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84623 Hypothetical protein Y65B4BL.7 [Caenorhabditis elegans] ref|NP_490743.2| Y65B4BL.7 [Caenorhabditis elegans] 1.0E-120
blast AAK84623 Hypothetical protein Y65B4BL.7 [Caenorhabditis elegans] ref|NP_490743.2| Y65B4BL.7 [Caenorhabditis elegans] 1.0E-95
blast AAK84623 Hypothetical protein Y65B4BL.7 [Caenorhabditis elegans] ref|NP_490743.2| Y65B4BL.7 [Caenorhabditis elegans] 2.0E-85
blast CAE61286 Hypothetical protein CBG05108 [Caenorhabditis briggsae] 5.0E-50
blast CAE61286 Hypothetical protein CBG05108 [Caenorhabditis briggsae] 2.0E-39
blast CAE61285 Hypothetical protein CBG05107 [Caenorhabditis briggsae] 9.0E-34
blast CAE61286 Hypothetical protein CBG05108 [Caenorhabditis briggsae] 2.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490743.2 4 30-48,92-114,127-149,164-186
Y65B4BL.7 4 30-48,92-114,127-149,164-186
SNAP00000040878 3 50-72,85-107,122-144
GENEFINDER00000040883 3 88-110,123-145,160-182
Sequence
Target Sequence 
>C. ELEGANS:174315_AT
gattcttatcacagtatctccgggaatggcttctcgtattcggaatccgattccatcact
ggcttcgttcatctatatgtcattttttttcaagtgcataacgaacttgctcacgtctat
cgcgatgctaccctatcttggatgtaccgatcaaccatcattttggggggagtatctcgc
tgccggcttgttgggacttttctggatgtattcgctgcttaacatgggtgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTTATCACAGTATCTCCGGGA 265 431 16 Antisense
AATGGCTTCTCGTATTCGGAATCCG 575 161 40 Antisense
TCGGAATCCGATTCCATCACTGGCT 589 605 55 Antisense
CACTGGCTTCGTTCATCTATATGTC 169 199 72 Antisense
TAACGAACTTGCTCACGTCTATCGC 541 637 114 Antisense
GATGCTACCCTATCTTGGATGTACC 403 413 139 Antisense
ATGTACCGATCAACCATCATTTTGG 184 45 157 Antisense
ATTTTGGGGGGAGTATCTCGCTGCC 645 11 175 Antisense
CCGGCTTGTTGGGACTTTTCTGGAT 553 263 198 Antisense
GACTTTTCTGGATGTATTCGCTGCT 101 371 210 Antisense
GTATTCGCTGCTTAACATGGGTGTA 106 453 223 Antisense
Sequence Source Affymetrix Proprietary Database