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[174311_at]

Description C57198_rc /REP_DB=TREMBL Accession /GB=C57198 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk300c8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 31      6grp_total > 29      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 713
1 2 3 4 range
A 818.6
(3)
P 		597.9
(-3)
P 		646.9
(-1.7)
P 		739.4
(0.8)
P 		221
B 1039.6
(1.9)
P 		698.5
(-1)
P 		461.1
(-3)
P 		1173.6
(3)
P 		713
C 1072.1
(3)
P 		606
(-3)
P 		676.7
(-2.1)
P 		1061.7
(2.9)
P 		466
avr 976.8
(2.8) 		634.1
(-2.4) 		594.9
(-3) 		991.6
(3) 		397

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 706
1 2 3 4 5 6 range
A 1091.8
(2)
P 		1162.3
(3)
P 		740.3
(-3)
P 		747.5
(-2.9)
P 		961.6
(0.1)
P 		772.5
(-2.5)
P 		422
B 1117.8
(1.8)
P 		1262.3
(3)
P 		556.3
(-3)
P 		881.1
(-0.2)
P 		1033.3
(1.1)
P 		828
(-0.7)
P 		706
C 1253.8
(3)
P 		1048.2
(0.7)
P 		750.5
(-2.7)
P 		721.4
(-3)
P 		1217.7
(2.6)
P 		728
(-2.9)
P 		532
avr 1154.5
(3) 		1157.6
(3) 		682.4
(-3) 		783.3
(-1.7) 		1070.9
(1.9) 		776.2
(-1.8) 		475
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 298.1
(3)
P 		129.8
(-2.3)
P 		169.1
(-1.1)
P 		108.2
(-3)
P 		190
B 331.5
(3)
P 		172.5
(-1.2)
P 		106.8
(-3)
P 		250.1
(0.8)
P 		225
C 354.9
(3)
P 		174.2
(-3)
P 		235.8
(-1)
P 		179
(-2.8)
P 		181
avr 328.2
(3) 		158.8
(-3) 		170.6
(-2.6) 		179.1
(-2.3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 201.3
(-2)
P 		413.4
(3)
P 		161.2
(-3)
P 		189.6
(-2.3)
P 		290.2
(0.1)
P 		188.1
(-2.4)
P 		252
B 388.9
(2.3)
P 		420.2
(3)
P 		135.1
(-3)
P 		233.4
(-0.9)
P 		419.8
(3)
P 		308.8
(0.7)
P 		285
C 464.7
(3)
P 		319.8
(0.3)
P 		191
(-2.1)
P 		145.1
(-3)
P 		394
(1.7)
P 		243.7
(-1.1)
P 		320
avr 351.6
(2.1) 		384.5
(3) 		162.4
(-3) 		189.4
(-2.3) 		368
(2.6) 		246.9
(-0.7) 		222
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174311_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22061
Sequence Type Exemplar sequence
Representative Public ID C57198 NCBI
Target Description C57198_rc /REP_DB=TREMBL Accession /GB=C57198 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk300c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029245(11), NM_076981(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029245 NCBI Caenorhabditis elegans C17H11.6c (C17H11.6) mRNA, complete cds. 11/11 None
NM_076981 NCBI Caenorhabditis elegans C17H11.6b (C17H11.6) mRNA, complete cds. 10/11 None
C17H11.6c.1 ENSEMBL cdna:known chromosome:CEL140:X:8185119:8203723:-1 gene:C17H11.6 11/11 A 
C17H11.6b ENSEMBL cdna:known chromosome:CEL140:X:8185191:8194652:-1 gene:C17H11.6 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181076 3 2 NM_001029245 174311_at (11)
NM_076981 174311_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8185139-8185479(-) 100.0 100.0
Public Domain and Genome References
Ensembl C17H11.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO91744 Hypothetical protein C17H11.6c [Caenorhabditis elegans] ref|NP_001024416.1| C17H11.6c [Caenorhabditis elegans] 0.0
blast AAK68189 Hypothetical protein C17H11.6a [Caenorhabditis elegans] ref|NP_509383.1| C17H11.6a [Caenorhabditis elegans] 0.0
blast AAK68190 Hypothetical protein C17H11.6b [Caenorhabditis elegans] ref|NP_509382.1| C17H11.6b [Caenorhabditis elegans] 0.0
blast T25555 hypothetical protein C17H11.6 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 5.8E-9
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 1.7E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024416.1 2 330-352,372-394
NP_509382.1 2 330-352,372-394
C17H11.6c.1 2 330-352,372-394
C17H11.6b 2 330-352,372-394
Sequence
Target Sequence 
>C. ELEGANS:174311_AT
ttcttctcataaccctgcaattttctccctttccccatcttttccatcttttccattcca
aattttctccttattgtccaataacaaaaacatcaacaacaactctatgcggtatttttt
tcgtacagtactttttctccctctttactgctagccacgacgtgtgtttatgttgtgatt
gccaaaaagtgtttcaaagtcaatctcgtcaatttctcatgttaacctgtttacacttgt
ttcaatttttcttgtctgacagtattggaatccaaattcaaatacaagtcatcatctctt
cattacattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTCTCATAACCCTGCAATTTTC 87 691 13 Antisense
TTCCATTCCAAATTTTCTCCTTATT 98 701 63 Antisense
CAAATTTTCTCCTTATTGTCCAATA 675 193 71 Antisense
ATCAACAACAACTCTATGCGGTATT 26 25 104 Antisense
TGCGGTATTTTTTTCGTACAGTACT 704 581 120 Antisense
TTTACTGCTAGCCACGACGTGTGTT 179 673 156 Antisense
GACGTGTGTTTATGTTGTGATTGCC 41 377 171 Antisense
TCTCGTCAATTTCTCATGTTAACCT 680 611 216 Antisense
TGTTAACCTGTTTACACTTGTTTCA 665 559 232 Antisense
GTTTCAATTTTTCTTGTCTGACAGT 407 449 251 Antisense
AAGTCATCATCTCTTCATTACATTC 423 157 298 Antisense
Sequence Source Affymetrix Proprietary Database