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[174310_at]

Description C38813_rc /REP_DB=TREMBL Accession /GB=C38813 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk500h8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 50      6grp_total > 16      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 567
1 2 3 4 range
A 772
(3)
P 		626.5
(1.5)
P 		523.4
(0.4)
P 		205
(-3)
P 		567
B 631.7
(2.3)
P 		674.3
(3)
P 		562.7
(1.2)
P 		296.5
(-3)
P 		378
C 690.7
(3)
P 		684.6
(2.9)
P 		567.7
(1.4)
P 		221.5
(-3)
P 		469
avr 698.1
(3) 		661.8
(2.5) 		551.3
(1.1) 		241
(-3) 		457

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 876
1 2 3 4 5 6 range
A 948.7
(3)
P 		479.3
(-1.1)
P 		340.3
(-2.2)
P 		269.7
(-2.9)
P 		366
(-2)
P 		253.3
(-3)
P 		695
B 1129.2
(3)
P 		717.6
(0.1)
P 		314.6
(-2.8)
P 		286.1
(-3)
P 		300
(-2.9)
P 		350.9
(-2.5)
P 		843
C 706.9
(3)
P 		629.8
(2)
P 		269
(-2.8)
P 		292.1
(-2.5)
P 		329.2
(-2)
P 		257.5
(-3)
P 		449
avr 928.3
(3) 		608.9
(0) 		308
(-2.8) 		282.6
(-3) 		331.7
(-2.5) 		287.2
(-3) 		646
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 281.1
(3)
P 		136
(-0.5)
P 		136.8
(-0.4)
P 		30
(-3)
P 		251
B 201.5
(3)
P 		166.5
(1.5)
P 		130.4
(-0.1)
P 		63.2
(-3)
P 		138
C 228.6
(3)
P 		196.8
(2)
P 		197.9
(2)
P 		37.3
(-3)
P 		191
avr 237.1
(3) 		166.4
(0.8) 		155
(0.5) 		43.5
(-3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 334
1 2 3 4 5 6 range
A 174.9
(3)
P 		170.5
(2.8)
P 		74.1
(-2.3)
P 		68.4
(-2.6)
P 		110.4
(-0.4)
P 		61.7
(-3)
P 		113
B 392.9
(3)
P 		238.8
(0.1)
P 		76.4
(-3)
P 		75.8
(-3)
P 		121.9
(-2.1)
P 		130.9
(-2)
P 		317
C 262
(3)
P 		192.2
(0.9)
P 		68.5
(-2.7)
P 		58.7
(-3)
P 		106.5
(-1.6)
P 		86.2
(-2.2)
P 		203
avr 276.6
(3) 		200.5
(0.8) 		73
(-2.8) 		67.6
(-3) 		112.9
(-1.7) 		92.9
(-2.3) 		209
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174310_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20099
Sequence Type Exemplar sequence
Representative Public ID C38813 NCBI
Target Description C38813_rc /REP_DB=TREMBL Accession /GB=C38813 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk500h8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71G12B.11a ENSEMBL cdna:known chromosome:CEL140:I:1721598:1740640:1 gene:Y71G12B.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016842 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1740312-1740630(+) 79.87 100.0
Public Domain and Genome References
Ensembl Y71G12B.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73909 Hypothetical protein Y71G12B.11a [Caenorhabditis elegans] ref|NP_490886.2| Y71G12B.11a [Caenorhabditis elegans] gb|AAA74747.1| talin 0.0
blast AAK73910 Hypothetical protein Y71G12B.11b [Caenorhabditis elegans] ref|NP_001021818.1| Y71G12B.11b [Caenorhabditis elegans] 0.0
blast CAE74421 Hypothetical protein CBG22153 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002558 EMBL-EBI I/LWEQ domain 6.7E-107
Pfam IPR000299 EMBL-EBI Band 4.1 9.1E-36
Sequence
Target Sequence 
>C. ELEGANS:174310_AT
gtaattttgtcacttggcaatcgatattattaattttaaaatattttaaaccggttccac
gtgacaaaaacttttttgaaattcttgttcaatttgccacatgtaaattaaaattttatc
gatttttccaattacgcgtggcaatttgtccaatttattgatttttttcttcttctcctc
acattgactatatcgaatggtgcaacaaaactttgattacatgtattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAATTTTGTCACTTGGCAATCGAT 524 463 68 Antisense
GTCACTTGGCAATCGATATTATTAA 579 463 76 Antisense
AATTCTTGTTCAATTTGCCACATGT 66 177 147 Antisense
TCTTGTTCAATTTGCCACATGTAAA 347 619 150 Antisense
TTATCGATTTTTCCAATTACGCGTG 96 679 183 Antisense
GATTTTTCCAATTACGCGTGGCAAT 374 429 188 Antisense
TACGCGTGGCAATTTGTCCAATTTA 373 649 200 Antisense
CTTCTTCTCCTCACATTGACTATAT 513 221 236 Antisense
TTCTCCTCACATTGACTATATCGAA 206 693 240 Antisense
GACTATATCGAATGGTGCAACAAAA 128 373 253 Antisense
ACAAAACTTTGATTACATGTATTTA 19 113 272 Antisense
Sequence Source Affymetrix Proprietary Database