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[174309_at]

Description C59487_rc /REP_DB=TREMBL Accession /GB=C59487 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk437a5 : 3prime end, single read.
Cluster 6grp_total > 0      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 32.5
(-0.7)
A 		14.3
(-2)
A 		1.7
(-3)
A 		80.7
(3)
M 		79
B 23.6
(1.5)
A 		1.2
(-3)
A 		2.1
(-2.8)
A 		30.8
(3)
A 		30
C 25.2
(-2)
A 		3
(-2.9)
A 		1.6
(-3)
A 		139.2
(3)
P 		138
avr 27.1
(-1.1) 		6.2
(-2.7) 		1.8
(-3) 		83.6
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 5.6
(-2.2)
A 		29.8
(3)
A 		1.9
(-3)
A 		14.7
(-0.2)
A 		19.3
(0.7)
A 		2.3
(-2.9)
A 		28
B 21.4
(0.6)
A 		8.1
(-2.7)
A 		21.9
(0.7)
A 		7.4
(-2.9)
A 		6.8
(-3)
A 		31
(3)
A 		24
C 1
(-2.9)
A 		33.2
(3)
P 		0.7
(-3)
A 		1.3
(-2.9)
A 		0.6
(-3)
A 		29.7
(2.4)
A 		33
avr 9.3
(-2.4) 		23.7
(3) 		8.2
(-2.8) 		7.8
(-3) 		8.9
(-2.6) 		21
(2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 11.8
(3)
A 		3.1
(-1.6)
A 		0.4
(-3)
A 		11.8
(3)
M 		11
B 7.5
(3)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		6.6
(2.3)
A 		7
C 8.3
(-1)
A 		0.9
(-2.9)
A 		0.6
(-3)
A 		23.5
(3)
P 		23
avr 9.2
(0.9) 		1.4
(-2.6) 		0.5
(-3) 		14
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1
(-2.6)
A 		10.6
(3)
A 		0.4
(-3)
A 		3.7
(-1.1)
A 		5.8
(0.2)
A 		0.6
(-2.9)
A 		10
B 7.4
(0.4)
A 		2.7
(-2.6)
A 		5.3
(-0.9)
A 		2
(-3)
A 		2.8
(-2.5)
A 		11.6
(3)
A 		10
C 0.4
(-2.9)
A 		10.1
(3)
P 		0.2
(-3)
A 		0.3
(-2.9)
A 		0.2
(-3)
A 		9.9
(2.9)
A 		10
avr 2.9
(-2.1) 		7.8
(3) 		2
(-3) 		2
(-3) 		2.9
(-2.1) 		7.4
(2.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174309_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21827
Sequence Type Exemplar sequence
Representative Public ID C59487 NCBI
Target Description C59487_rc /REP_DB=TREMBL Accession /GB=C59487 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk437a5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C59487
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C59487 C59487_rc /REP_DB=TREMBL Accession /GB=C59487 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk437a5 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021833 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:174309_AT
tgccgcacttgtgggtttacgagctgaatattttccttctatttttatttgattttatac
cgattttcgtcgatttttctcatttttttggtgtttttcattgaaaattttgtgattttc
gtaaatttattcctatttattaataaaaacaaaaacaattccattaaatatcccattttc
agcgcaaaatcgactggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGCACTTGTGGGTTTACGAGCT 395 585 41 Antisense
GCACTTGTGGGTTTACGAGCTGAAT 571 313 45 Antisense
TACGAGCTGAATATTTTCCTTCTAT 146 649 58 Antisense
TATTTTCCTTCTATTTTTATTTGAT 673 661 69 Antisense
TATTTGATTTTATACCGATTTTCGT 314 661 86 Antisense
TACCGATTTTCGTCGATTTTTCTCA 456 649 98 Antisense
CCGATTTTCGTCGATTTTTCTCATT 233 265 100 Antisense
GTGATTTTCGTAAATTTATTCCTAT 136 485 152 Antisense
AACAATTCCATTAAATATCCCATTT 665 133 194 Antisense
TAAATATCCCATTTTCAGCGCAAAA 701 641 205 Antisense
ATTTTCAGCGCAAAATCGACTGGAG 122 15 215 Antisense
Sequence Source Affymetrix Proprietary Database