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[174308_at]

Description CEC053_rc /REP_DB=TREMBL Accession /GB=C08053 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk173b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 42      4grp_high_8_8 > 41      6grp_highest_nonorm > 50      6grp_total > 04      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 541
1 2 3 4 range
A 931.2
(3)
P 		538.1
(-1.5)
P 		577.3
(-1)
P 		403.5
(-3)
P 		528
B 924.3
(3)
P 		592.3
(-1.6)
P 		602.8
(-1.4)
P 		487.4
(-3)
P 		437
C 861
(3)
P 		702.6
(1)
P 		653.5
(0.4)
P 		390.2
(-3)
P 		471
avr 905.5
(3) 		611
(-0.7) 		611.2
(-0.7) 		427
(-3) 		479

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 623
1 2 3 4 5 6 range
A 786.6
(3)
P 		718.5
(2.3)
P 		398.9
(-0.8)
P 		440.4
(-0.4)
P 		338.3
(-1.4)
P 		175.4
(-3)
P 		611
B 747.7
(3)
P 		638.5
(1.8)
P 		223.6
(-2.8)
P 		420.1
(-0.6)
P 		379.1
(-1.1)
P 		206.7
(-3)
P 		541
C 784.1
(3)
P 		694.6
(2.1)
P 		370.4
(-1)
P 		210.7
(-2.5)
P 		325.2
(-1.4)
P 		163.6
(-3)
P 		621
avr 772.8
(3) 		683.9
(2.1) 		331
(-1.5) 		357.1
(-1.2) 		347.5
(-1.3) 		181.9
(-3) 		591
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 339
(3)
P 		116.8
(-1.8)
P 		150.9
(-1)
P 		59.1
(-3)
P 		280
B 294.8
(3)
P 		146.3
(-1.7)
P 		139.7
(-1.9)
P 		103.9
(-3)
P 		191
C 285
(3)
P 		202
(0.7)
P 		227.8
(1.4)
P 		65.8
(-3)
P 		219
avr 306.3
(3) 		155
(-0.9) 		172.8
(-0.5) 		76.3
(-3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 145
(-0.1)
P 		255.5
(3)
P 		86.9
(-1.8)
P 		111.7
(-1.1)
P 		102.1
(-1.3)
P 		42.7
(-3)
P 		213
B 260.2
(3)
P 		212.5
(1.6)
P 		54.3
(-3)
P 		111.3
(-1.3)
P 		154
(-0.1)
P 		77.1
(-2.3)
P 		206
C 290.6
(3)
P 		211.9
(1.1)
P 		94.3
(-1.7)
P 		42.4
(-3)
P 		105.2
(-1.5)
P 		54.8
(-2.7)
P 		248
avr 231.9
(3) 		226.6
(2.8) 		78.5
(-2.3) 		88.5
(-2) 		120.4
(-0.9) 		58.2
(-3) 		174
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174308_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22200
Sequence Type Exemplar sequence
Representative Public ID CEC053 NCBI
Target Description CEC053_rc /REP_DB=TREMBL Accession /GB=C08053 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk173b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076456(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076456 NCBI Caenorhabditis elegans ZC449.5 (ZC449.5) mRNA, complete cds. 11/11 None
ZC449.5.3 ENSEMBL cdna:known chromosome:CEL140:X:5034994:5037742:-1 gene:ZC449.5 11/11 None
ZC449.5.1 ENSEMBL cdna:known chromosome:CEL140:X:5034994:5037740:-1 gene:ZC449.5 11/11 None
ZC449.5.2 ENSEMBL cdna:known chromosome:CEL140:X:5034994:5037742:-1 gene:ZC449.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5035027-5035401(-) 88.77 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC449.5
Entrez Gene 180776 Entrez gene
SwissProt Q23330 EMBL-EBI
WormBase CE27350 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39385 Hypothetical protein ZC449.5 [Caenorhabditis elegans] ref|NP_508857.1| ZC449.5 [Caenorhabditis elegans] 1.0E-52
blast T29919 hypothetical protein ZC449.5 - Caenorhabditis elegans 1.0E-52
blast CAE68684 Hypothetical protein CBG14595 [Caenorhabditis briggsae] 6.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508857.1 1 423-445
ZC449.5.3 1 423-445
ZC449.5.1 1 423-445
ZC449.5.2 1 423-445
Sequence
Target Sequence 
>C. ELEGANS:174308_AT
tttcagttaaactctttattctaataattgcagttattattcattttcatccatcttctt
ctcctcctccttttttacttgtaaaactgttcacccacactcttcactgtcattttccac
tcctccttcgctttgtctcttataggtatacaattttccgacgaattgcagttgtgactt
cgcgggaatctttttttgtgtcgttcttacacgtttttagtttctctccatgattcataa
attcgagatttttttcgtaccatgatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCAGTTAAACTCTTTATTCTAAT 236 673 82 Antisense
TTGTAAAACTGTTCACCCACACTCT 152 705 160 Antisense
CTCCTTCGCTTTGTCTCTTATAGGT 16 235 204 Antisense
TATAGGTATACAATTTTCCGACGAA 557 655 222 Antisense
TTTTCCGACGAATTGCAGTTGTGAC 433 675 235 Antisense
GCAGTTGTGACTTCGCGGGAATCTT 77 311 249 Antisense
TCGCGGGAATCTTTTTTTGTGTCGT 114 591 261 Antisense
TTGTGTCGTTCTTACACGTTTTTAG 362 701 277 Antisense
TTACACGTTTTTAGTTTCTCTCCAT 11 685 288 Antisense
TTAGTTTCTCTCCATGATTCATAAA 559 679 298 Antisense
GAGATTTTTTTCGTACCATGATGAT 464 397 326 Antisense
Sequence Source Affymetrix Proprietary Database