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[174307_at]

Description C53223_rc /REP_DB=TREMBL Accession /GB=C53223 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk295d4 : 3prime end, single read.
Cluster 6grp_total > 54      4grp_total > 12      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 14.8
(-2.7)
A 		13
(-3)
A 		32.8
(0.3)
A 		48.9
(3)
A 		36
B 32.7
(3)
A 		23.6
(-0.7)
A 		17.9
(-3)
A 		22.5
(-1.1)
A 		15
C 32.7
(0.6)
A 		24.3
(-0.4)
A 		4.4
(-3)
A 		51
(3)
P 		47
avr 26.7
(-0.8) 		20.3
(-2.5) 		18.4
(-3) 		40.8
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 35.9
(2.3)
A 		29.6
(0.7)
A 		38.7
(3)
A 		24.4
(-0.7)
A 		15.2
(-3)
A 		19.5
(-1.9)
A 		24
B 4.2
(-2.7)
A 		25.1
(1.7)
A 		31.4
(3)
A 		3
(-3)
A 		21.3
(0.9)
A 		23.7
(1.4)
A 		28
C 6
(-2.6)
A 		43.7
(3)
A 		42.2
(2.8)
A 		26.5
(0.4)
A 		3.3
(-3)
A 		22
(-0.2)
A 		40
avr 15.4
(-2.5) 		32.8
(1.9) 		37.4
(3) 		18
(-1.8) 		13.3
(-3) 		21.7
(-0.9) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.4
(-0.3)
A 		2.8
(-3)
A 		8.6
(3)
A 		7.2
(1.6)
A 		6
B 10.4
(3)
A 		5.8
(-1.5)
A 		4.2
(-3)
A 		4.8
(-2.4)
A 		6
C 10.8
(3)
A 		7
(0.5)
A 		1.5
(-3)
A 		8.6
(1.6)
P 		9
avr 8.9
(3) 		5.2
(-2.4) 		4.8
(-3) 		6.9
(0.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 6.6
(-1)
A 		10.5
(3)
A 		8.4
(0.9)
A 		6.2
(-1.4)
A 		4.6
(-3)
A 		4.7
(-2.9)
A 		6
B 1.5
(-2.5)
A 		8.4
(2.6)
A 		7.6
(2)
A 		0.8
(-3)
A 		8.7
(2.9)
A 		8.9
(3)
A 		8
C 2.2
(-2.5)
A 		13.3
(3)
A 		10.7
(1.7)
A 		5.3
(-0.9)
A 		1.1
(-3)
A 		7.4
(0.1)
A 		12
avr 3.4
(-3) 		10.7
(3) 		8.9
(1.5) 		4.1
(-2.4) 		4.8
(-1.8) 		7
(-0) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174307_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20096
Sequence Type Exemplar sequence
Representative Public ID C53223 NCBI
Target Description C53223_rc /REP_DB=TREMBL Accession /GB=C53223 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk295d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C53223
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C53223 C53223_rc /REP_DB=TREMBL Accession /GB=C53223 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk295d4 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058820 11/11 Negative Strand Matching Probes A 
SNAP00000040653 11/11 Negative Strand Matching Probes None
GENEFINDER00000040662 11/11 Negative Strand Matching Probes None
C32E8.8 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3791863-3792143(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174307_AT
gcgaggaatcagtgtatccgcatttctcttaagctcatctgctagagtttgagagtggaa
gtaggtgatagagatgtatggatcttctggatactgggtgagcattctgccgagttctag
ctcccattctcccgaaatatagctcatttcttctgggtgaaacttcagatgatagatcat
gaaccaggctttcgctgatgcaaggatatctgtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGGAATCAGTGTATCCGCATTT 567 289 38 Antisense
TGTATCCGCATTTCTCTTAAGCTCA 104 561 50 Antisense
CTTAAGCTCATCTGCTAGAGTTTGA 87 221 65 Antisense
GATGTATGGATCTTCTGGATACTGG 434 409 110 Antisense
GGATACTGGGTGAGCATTCTGCCGA 621 509 126 Antisense
GAGCATTCTGCCGAGTTCTAGCTCC 375 389 137 Antisense
GCTCCCATTCTCCCGAAATATAGCT 266 299 157 Antisense
AATATAGCTCATTTCTTCTGGGTGA 366 173 173 Antisense
GATAGATCATGAACCAGGCTTTCGC 516 423 208 Antisense
TGAACCAGGCTTTCGCTGATGCAAG 58 573 217 Antisense
TCGCTGATGCAAGGATATCTGTCTC 469 597 229 Antisense
Sequence Source Affymetrix Proprietary Database