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[174306_at]

Description C34030_rc /REP_DB=TREMBL Accession /GB=C34030 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk391d5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 80      6grp_total > 36      4grp_total > 30      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 440.3
(3)
P 		200.9
(-2)
P 		155.3
(-3)
P 		282.7
(-0.3)
P 		285
B 423.3
(3)
P 		222.3
(-1.2)
P 		138.3
(-3)
P 		344.6
(1.3)
P 		285
C 473
(2.8)
P 		217.3
(-2.3)
P 		183.9
(-3)
P 		484.5
(3)
P 		301
avr 445.5
(3) 		213.5
(-1.9) 		159.2
(-3) 		370.6
(1.4) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 292.8
(3)
P 		271.2
(2.4)
P 		207.6
(0.6)
P 		82.7
(-3)
P 		105.5
(-2.3)
P 		192
(0.1)
P 		210
B 261.8
(2.3)
P 		284.4
(3)
P 		160.3
(-1)
P 		100.4
(-3)
P 		121.7
(-2.3)
P 		222.9
(1)
P 		184
C 254.2
(1.2)
P 		307.9
(3)
P 		152
(-2.3)
P 		132
(-3)
P 		136.6
(-2.8)
P 		187.1
(-1.1)
P 		176
avr 269.6
(2.4) 		287.8
(3) 		173.3
(-0.8) 		105
(-3) 		121.3
(-2.5) 		200.7
(0.1) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 160.3
(3)
P 		43.6
(-2.8)
P 		40.6
(-3)
P 		41.4
(-3)
P 		120
B 135
(3)
P 		54.9
(-1.7)
P 		32
(-3)
P 		73.4
(-0.6)
P 		103
C 156.6
(3)
P 		62.5
(-3)
P 		64.1
(-2.9)
P 		81.7
(-1.8)
P 		94
avr 150.6
(3) 		53.7
(-2.5) 		45.6
(-3) 		65.5
(-1.9) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 54
(-0.4)
P 		96.5
(3)
P 		45.2
(-1.1)
P 		21
(-3)
P 		31.8
(-2.1)
P 		46.7
(-1)
P 		76
B 91.1
(2.7)
P 		94.7
(3)
P 		38.9
(-1.9)
P 		26.6
(-3)
P 		49.4
(-1)
P 		83.1
(2)
P 		68
C 94.2
(3)
P 		93.9
(3)
P 		38.7
(-1.9)
P 		26.6
(-3)
P 		44.2
(-1.4)
P 		62.6
(0.2)
P 		68
avr 79.8
(1.7) 		95
(3) 		40.9
(-1.6) 		24.7
(-3) 		41.8
(-1.5) 		64.1
(0.4) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174306_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22084
Sequence Type Exemplar sequence
Representative Public ID C34030 NCBI
Target Description C34030_rc /REP_DB=TREMBL Accession /GB=C34030 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk391d5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R08B4.2 ENSEMBL cdna:known chromosome:CEL140:X:11121866:11125537:-1 gene:R08B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11121875-11122155(-) 100.0 100.0
Public Domain and Genome References
Ensembl R08B4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92001 Hypothetical protein R08B4.2 [Caenorhabditis elegans] ref|NP_509860.1| R08B4.2 [Caenorhabditis elegans] 1.0E-161
blast CAE70698 Hypothetical protein CBG17430 [Caenorhabditis briggsae] 1.0E-130
blast AAF51505 CG3935-PA [Drosophila melanogaster] gb|AAM52023.1| RE68460p [Drosophila melanogaster] ref|NP_722629.1| CG3935-PA [Drosophila melanogaster] sp|Q06453|AL_DROME Homeobox protein aristaless 1.0E-26
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 9.99999988726602E-27
Pfam IPR001356 EMBL-EBI Homeobox 4.5E-32
Sequence
Target Sequence 
>C. ELEGANS:174306_AT
gacaattagaattccttgactcaaattgaaatcggatctccattttctccactcatcgtg
acgttttgttttaaacttacctttgtattttgttttcaacatttcctaataatcctttgt
caaatctatgtagtttgggaagcactgttcatagattatttaatcaacgctcgtgttata
cactgaacaacaacctcttttttctaaactcgcctctttaattgttaactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATTAGAATTCCTTGACTCAAA 6 361 17 Antisense
TGAAATCGGATCTCCATTTTCTCCA 156 573 43 Antisense
TTTCTCCACTCATCGTGACGTTTTG 117 669 60 Antisense
TGTATTTTGTTTTCAACATTTCCTA 216 561 100 Antisense
AACATTTCCTAATAATCCTTTGTCA 304 117 114 Antisense
ATCCTTTGTCAAATCTATGTAGTTT 284 39 128 Antisense
GTAGTTTGGGAAGCACTGTTCATAG 424 455 146 Antisense
TAATCAACGCTCGTGTTATACACTG 421 635 177 Antisense
TACACTGAACAACAACCTCTTTTTT 347 641 195 Antisense
TTTTCTAAACTCGCCTCTTTAATTG 118 673 216 Antisense
AACTCGCCTCTTTAATTGTTAACTG 667 141 223 Antisense
Sequence Source Affymetrix Proprietary Database