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[174305_s_at]

Description C30732_rc /REP_DB=TREMBL Accession /GB=C30732 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk257e7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 65      6grp_total > 78      4grp_total > 63      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 456.7
(3)
P 		340.8
(0.1)
P 		374.7
(1)
A 		213.8
(-3)
A 		243
B 535.9
(3)
A 		425.6
(0.6)
A 		317.6
(-1.7)
P 		254.6
(-3)
A 		281
C 553.3
(3)
P 		237.7
(-3)
M 		385.6
(-0.2)
P 		252.8
(-2.7)
A 		316
avr 515.3
(3) 		334.7
(-0.9) 		359.3
(-0.4) 		240.4
(-3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 510
1 2 3 4 5 6 range
A 245.4
(-3)
M 		367.8
(-0.9)
P 		276.1
(-2.5)
M 		321.6
(-1.7)
P 		535.2
(1.9)
P 		600
(3)
M 		355
B 437.6
(-3)
P 		599.1
(0.1)
P 		755
(3)
P 		440.9
(-2.9)
A 		535.8
(-1.1)
P 		736.8
(2.7)
P 		317
C 414.4
(-0.9)
P 		514.8
(0.3)
P 		393.2
(-1.2)
M 		246
(-3)
P 		383.6
(-1.3)
P 		734
(3)
P 		488
avr 365.8
(-2.5) 		493.9
(-0.3) 		474.8
(-0.7) 		336.2
(-3) 		484.9
(-0.5) 		690.3
(3) 		354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 166.3
(3)
P 		74
(-1.1)
P 		98
(-0)
A 		31.3
(-3)
A 		135
B 170.9
(3)
A 		105.1
(-0.4)
A 		73.6
(-2)
P 		54.2
(-3)
A 		117
C 183.1
(3)
P 		68.3
(-1.9)
M 		134.4
(0.9)
P 		42.6
(-3)
A 		141
avr 173.4
(3) 		82.5
(-1.2) 		102
(-0.3) 		42.7
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 45.2
(-3)
M 		130.8
(1.4)
P 		60.1
(-2.2)
M 		81.6
(-1.1)
P 		161.5
(3)
P 		146.1
(2.2)
M 		116
B 152.3
(-1.7)
P 		199.4
(0.1)
P 		183.3
(-0.5)
P 		116.8
(-3)
A 		217.7
(0.8)
P 		274.8
(3)
P 		158
C 153.6
(0.2)
P 		157.1
(0.3)
P 		100.1
(-1.5)
M 		49.5
(-3)
P 		124.1
(-0.7)
P 		245.7
(3)
P 		196
avr 117
(-1.5) 		162.4
(0.4) 		114.5
(-1.6) 		82.6
(-3) 		167.8
(0.7) 		222.2
(3) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174305_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20535
Sequence Type Exemplar sequence
Representative Public ID C30732 NCBI
Target Description C30732_rc /REP_DB=TREMBL Accession /GB=C30732 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk257e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064013(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064013 NCBI Caenorhabditis elegans C47G2.5 (C47G2.5) mRNA, complete cds. 11/11 None
C47G2.5 ENSEMBL cdna:known chromosome:CEL140:II:11296544:11301170:1 gene:C47G2.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11300799-11301083(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47G2.5
Entrez Gene 174725 Entrez gene
SwissProt Q18696 EMBL-EBI
WormBase CE38162 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88937 Hypothetical protein C47G2.5 [Caenorhabditis elegans] ref|NP_496414.2| C47G2.5 [Caenorhabditis elegans] 0.0
blast CAE59538 Hypothetical protein CBG02933 [Caenorhabditis briggsae] 0.0
blast AAH73386 MGC80827 protein [Xenopus laevis] 2.0E-15
blast AAH73386 MGC80827 protein [Xenopus laevis] 3.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR007587 EMBL-EBI SIT4 phosphatase-associated protein 1.0E-126
Pfam IPR007587 EMBL-EBI SIT4 phosphatase-associated protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174305_S_AT
ttgctggtttcttctaaagaacattatcttatcatttaaaaaaagtgagcgcccccagtg
ataagaagcacggcttatttgttacttcttctaatacataatatatgattctcgggcaac
ttttaatttggtccaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTGGTTTCTTCTAAAGAACATT 157 703 33 Antisense
AGAACATTATCTTATCATTTAAAAA 560 73 50 Antisense
TAAAAAAAGTGAGCGCCCCCAGTGA 88 639 69 Antisense
TGAGCGCCCCCAGTGATAAGAAGCA 296 565 78 Antisense
GCCCCCAGTGATAAGAAGCACGGCT 145 287 83 Antisense
AGCACGGCTTATTTGTTACTTCTTC 488 77 99 Antisense
CGGCTTATTTGTTACTTCTTCTAAT 31 243 103 Antisense
GTTACTTCTTCTAATACATAATATA 226 447 113 Antisense
AATATATGATTCTCGGGCAACTTTT 680 173 132 Antisense
ATGATTCTCGGGCAACTTTTAATTT 394 45 137 Antisense
GGCAACTTTTAATTTGGTCCAATCT 104 525 147 Antisense
Sequence Source Affymetrix Proprietary Database