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[174304_s_at] ATP synthase D chain

Description C32111_rc /REP_DB=TREMBL Accession /GB=C32111 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk319h7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 21      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 07      6grp_total > 32      4grp_total > 59      6grp_cgc > 71      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6830
1 2 3 4 range
A 13825.8
(1.3)
P 		15751.7
(3)
P 		15286.4
(2.6)
P 		9116.9
(-3)
P 		6635
B 13102.3
(1.2)
P 		14642.8
(3)
P 		14606.5
(3)
P 		9401
(-3)
P 		5242
C 13480.8
(1.9)
P 		14548.4
(3)
P 		13860.6
(2.3)
P 		8921.7
(-3)
P 		5627
avr 13469.6
(1.4) 		14981
(3) 		14584.5
(2.6) 		9146.5
(-3) 		5835

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8139
1 2 3 4 5 6 range
A 15661
(1)
P 		13903.5
(-0.3)
P 		18253.2
(3)
P 		12905
(-1.1)
P 		11895.3
(-1.9)
P 		10391.6
(-3)
P 		7862
B 15784.8
(2.7)
P 		13632.8
(0.5)
P 		16080.6
(3)
P 		13778.5
(0.7)
P 		11568.7
(-1.5)
P 		10114.5
(-3)
P 		5966
C 13276.2
(0.4)
P 		15230.2
(3)
P 		14781.8
(2.4)
P 		13781.2
(1.1)
P 		11708.9
(-1.6)
P 		10676.5
(-3)
P 		4554
avr 14907.3
(1.5) 		14255.5
(0.9) 		16371.9
(3) 		13488.2
(0.1) 		11724.3
(-1.7) 		10394.2
(-3) 		5978
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3700
1 2 3 4 range
A 5034
(3)
P 		3419.3
(0.4)
P 		3996.2
(1.3)
P 		1334.5
(-3)
P 		3700
B 4178.2
(3)
P 		3616.4
(1.5)
P 		3384.7
(0.8)
P 		2003.4
(-3)
P 		2175
C 4462.5
(2.3)
P 		4182.7
(1.8)
P 		4830.9
(3)
P 		1504.3
(-3)
P 		3327
avr 4558.2
(3) 		3739.5
(1.3) 		4070.6
(2) 		1614.1
(-3) 		2944

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2962
1 2 3 4 5 6 range
A 2887
(-2.1)
P 		4944.8
(3)
P 		3975.2
(0.6)
P 		3273
(-1.2)
P 		3589.5
(-0.4)
P 		2530
(-3)
P 		2415
B 5492.3
(3)
P 		4537.8
(-0.1)
P 		3904.8
(-2.2)
P 		3649.5
(-3)
P 		4700.2
(0.4)
P 		3771.7
(-2.6)
P 		1843
C 4920.9
(3)
P 		4647.2
(2.2)
P 		3762.2
(-0.2)
P 		2771.4
(-3)
P 		3788.8
(-0.2)
P 		3574
(-0.8)
P 		2150
avr 4433.4
(1.9) 		4709.9
(3) 		3880.7
(-0.4) 		3231.3
(-3) 		4026.2
(0.2) 		3291.9
(-2.8) 		1479
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174304_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21811
Sequence Type Exemplar sequence
Representative Public ID C32111 NCBI
Target Description C32111_rc /REP_DB=TREMBL Accession /GB=C32111 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk319h7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073428(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073428 NCBI Caenorhabditis elegans C06H2.1 (C06H2.1) mRNA, complete cds. 11/11 A 
SNAP00000033415 ENSEMBL cdna:SNAP chromosome:CEL140:V:11125702:11126453:-1 11/11 None
GENEFINDER00000033427 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11125702:11126453:-1 11/11 None
C06H2.1.1 ENSEMBL cdna:known chromosome:CEL140:V:11125408:11126455:-1 gene:C06H2.1 11/11 A 
C06H2.1.2 ENSEMBL cdna:known chromosome:CEL140:V:11125489:11126563:-1 gene:C06H2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11125417-11125881(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATP synthase D chain
Gene Symbol atp-5
Ensembl C06H2.1
Entrez Gene 179541 Entrez gene
SwissProt Q17763 EMBL-EBI
WormBase CE15602 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99772 Hypothetical protein C06H2.1 [Caenorhabditis elegans] ref|NP_505829.1| C06H2.1 [Caenorhabditis elegans] 3.0E-99
blast CAE75171 Hypothetical protein CBG23108 [Caenorhabditis briggsae] 9.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR008689 EMBL-EBI ATP synthase D chain, mitochondrial 1.4E-110
Sequence
Target Sequence 
>C. ELEGANS:174304_S_AT
tcatttctatgatcttcgctaccagaacagaattcctgatccatgcaacatcggactcaa
cgagactccagaaattgagaacagattcaaggactacaaggtgacgtgccgacaaggttg
acgaccatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTTCTATGATCTTCGCTACCAG 620 619 13 Antisense
TCTATGATCTTCGCTACCAGAACAG 18 615 18 Antisense
TCTTCGCTACCAGAACAGAATTCCT 444 605 25 Antisense
ACAGAATTCCTGATCCATGCAACAT 393 109 39 Antisense
GAATTCCTGATCCATGCAACATCGG 77 325 42 Antisense
GATCCATGCAACATCGGACTCAACG 552 415 50 Antisense
AACATCGGACTCAACGAGACTCCAG 529 137 59 Antisense
GGACTCAACGAGACTCCAGAAATTG 452 523 65 Antisense
GAGAACAGATTCAAGGACTACAAGG 23 393 89 Antisense
GACGTGCCGACAAGGTTGACGACCA 218 377 115 Antisense
GTGCCGACAAGGTTGACGACCATTA 685 475 118 Antisense
Sequence Source Affymetrix Proprietary Database