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[174303_at] ATP synthase D chain

Description C32111_rc /REP_DB=TREMBL Accession /GB=C32111 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk319h7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 22      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 27      6grp_total > 13      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3970
1 2 3 4 range
A 8956.8
(1.5)
P 		7139.5
(-3)
P 		9567.6
(3)
P 		8257.9
(-0.2)
P 		2428
B 9269.8
(1.2)
P 		8939.2
(0.7)
P 		10456.2
(3)
P 		6486.6
(-3)
P 		3970
C 8907.6
(0.8)
P 		9800
(3)
P 		9165.8
(1.5)
P 		7334.1
(-3)
P 		2466
avr 9044.7
(1.3) 		8626.2
(0.2) 		9729.9
(3) 		7359.5
(-3) 		2370

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3673
1 2 3 4 5 6 range
A 8961
(2.4)
P 		8556.8
(1.7)
P 		9344.7
(3)
P 		6971.5
(-0.9)
P 		7731.7
(0.4)
P 		5671.8
(-3)
P 		3673
B 8385.7
(2.7)
P 		8478.2
(3)
P 		6809.9
(-1.7)
P 		8079.2
(1.9)
P 		6918
(-1.4)
P 		6357.9
(-3)
P 		2120
C 8177.6
(3)
P 		7973.5
(2.4)
P 		7438.5
(0.7)
P 		7289.6
(0.2)
P 		6753.3
(-1.5)
P 		6288.4
(-3)
P 		1889
avr 8508.1
(3) 		8336.2
(2.6) 		7864.4
(1.4) 		7446.8
(0.3) 		7134.3
(-0.4) 		6106
(-3) 		2402
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2052
1 2 3 4 range
A 3261.2
(3)
P 		1549.8
(-2)
P 		2501.2
(0.8)
P 		1208.8
(-3)
P 		2052
B 2956.1
(3)
P 		2207.8
(0.1)
P 		2422.9
(1)
P 		1382.3
(-3)
P 		1574
C 2948.6
(2.2)
P 		2817.5
(1.8)
P 		3194.6
(3)
P 		1236.6
(-3)
P 		1958
avr 3055.3
(3) 		2191.7
(0.1) 		2706.2
(1.8) 		1275.9
(-3) 		1779

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1662
1 2 3 4 5 6 range
A 1651.9
(-2)
P 		3043.2
(3)
P 		2035.1
(-0.6)
P 		1768.1
(-1.6)
P 		2333.1
(0.4)
P 		1380.9
(-3)
P 		1662
B 2917.8
(3)
P 		2822
(2.5)
P 		1653.6
(-3)
P 		2139.9
(-0.7)
P 		2810.7
(2.5)
P 		2370.8
(0.4)
P 		1264
C 3031.1
(3)
P 		2433
(0.7)
P 		1893.2
(-1.4)
P 		1465.9
(-3)
P 		2185.3
(-0.2)
P 		2105.1
(-0.5)
P 		1565
avr 2533.6
(1.6) 		2766.1
(3) 		1860.6
(-2.6) 		1791.3
(-3) 		2443
(1) 		1952.3
(-2) 		975
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174303_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21811
Sequence Type Exemplar sequence
Representative Public ID C32111 NCBI
Target Description C32111_rc /REP_DB=TREMBL Accession /GB=C32111 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk319h7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073428(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073428 NCBI Caenorhabditis elegans C06H2.1 (C06H2.1) mRNA, complete cds. 11/11 None
C06H2.1.1 ENSEMBL cdna:known chromosome:CEL140:V:11125408:11126455:-1 gene:C06H2.1 11/11 A 
C06H2.1.2 ENSEMBL cdna:known chromosome:CEL140:V:11125489:11126563:-1 gene:C06H2.1 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11125417-11125881(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATP synthase D chain
Gene Symbol atp-5
Ensembl C06H2.1
Entrez Gene 179541 Entrez gene
SwissProt Q17763 EMBL-EBI
WormBase CE15602 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99772 Hypothetical protein C06H2.1 [Caenorhabditis elegans] ref|NP_505829.1| C06H2.1 [Caenorhabditis elegans] 3.0E-99
blast CAE75171 Hypothetical protein CBG23108 [Caenorhabditis briggsae] 9.0E-97
blast AAR09709 similar to Drosophila melanogaster ATPsyn-d [Drosophila yakuba] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR008689 EMBL-EBI ATP synthase D chain, mitochondrial 1.4E-110
Sequence
Target Sequence 
>C. ELEGANS:174303_AT
gttgacgaccattaaacgatttatcatgatgtaccgttcagtagacaactctcgttcttc
cttatcgctctcctaccatttttaagaccattttgatttgttttgtagccgtttgtttta
taatttcgtcgaatttttttatgtgcctgggagcttatgcagtcgatacccccttcttca
gattatgtatttcataagagtgatggcaagataaagaactttcgcatgtttcctttatat
tatatgagaatttctttgcaattcgcgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGACGACCATTAAACGATTTATC 647 417 129 Antisense
GATTTATCATGATGTACCGTTCAGT 387 429 146 Antisense
TCAGTAGACAACTCTCGTTCTTCCT 297 623 166 Antisense
ATCGCTCTCCTACCATTTTTAAGAC 437 37 192 Antisense
TGATTTGTTTTGTAGCCGTTTGTTT 398 563 222 Antisense
TCGTCGAATTTTTTTATGTGCCTGG 293 605 254 Antisense
ATGTGCCTGGGAGCTTATGCAGTCG 569 49 269 Antisense
GGGAGCTTATGCAGTCGATACCCCC 258 495 277 Antisense
TACCCCCTTCTTCAGATTATGTATT 533 647 295 Antisense
AAGAACTTTCGCATGTTTCCTTTAT 30 153 342 Antisense
TGAGAATTTCTTTGCAATTCGCGCG 500 569 373 Antisense
Sequence Source Affymetrix Proprietary Database