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[174302_at]

Description C59637_rc /REP_DB=TREMBL Accession /GB=C59637 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439e9 : 3prime end, single read.
Cluster 6grp_total > 31      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 19.1
(-1.6)
A 		6.7
(-3)
A 		60.3
(3)
A 		8.4
(-2.8)
A 		54
B 21.5
(0.2)
A 		10.7
(-1.9)
A 		36.5
(3)
A 		4.7
(-3)
A 		32
C 4.7
(-3)
A 		31.3
(-1.3)
A 		21
(-1.9)
A 		97.5
(3)
A 		93
avr 15.1
(-3) 		16.2
(-2.7) 		39.3
(3) 		36.9
(2.4) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 3.6
(-3)
A 		10.8
(-2.4)
A 		70.4
(3)
A 		16.4
(-1.9)
A 		8.5
(-2.6)
A 		5.1
(-2.9)
A 		67
B 60.7
(3)
A 		42.6
(1.1)
A 		44.6
(1.3)
A 		34.4
(0.2)
A 		5
(-2.9)
A 		4.3
(-3)
A 		56
C 1.4
(-3)
A 		70.2
(3)
A 		32.4
(-0.3)
A 		5.3
(-2.7)
A 		6.8
(-2.5)
A 		5.4
(-2.7)
A 		69
avr 21.9
(-0.7) 		41.2
(1.9) 		49.1
(3) 		18.7
(-1.1) 		6.8
(-2.7) 		4.9
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7
(-0.6)
A 		1.5
(-2.9)
A 		15.8
(3)
A 		1.2
(-3)
A 		15
B 6.8
(1.6)
A 		2.6
(-1.7)
A 		8.5
(3)
A 		1
(-3)
A 		8
C 1.6
(-3)
A 		9
(0)
A 		7.3
(-0.7)
A 		16.4
(3)
A 		15
avr 5.1
(-2.3) 		4.4
(-3) 		10.5
(3) 		6.2
(-1.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 0.7
(-3)
A 		3.8
(-1.7)
A 		15.3
(3)
A 		4.2
(-1.6)
A 		2.6
(-2.2)
A 		1.2
(-2.8)
A 		15
B 21.1
(3)
A 		14.2
(0.9)
A 		10.8
(-0.2)
A 		9.1
(-0.7)
A 		2
(-2.9)
A 		1.6
(-3)
A 		20
C 0.5
(-3)
A 		21.4
(3)
A 		8.2
(-0.8)
A 		1.1
(-2.8)
A 		2.2
(-2.5)
A 		1.8
(-2.6)
A 		21
avr 7.4
(0.1) 		13.1
(3) 		11.4
(2.1) 		4.8
(-1.3) 		2.3
(-2.6) 		1.5
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174302_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22323
Sequence Type Exemplar sequence
Representative Public ID C59637 NCBI
Target Description C59637_rc /REP_DB=TREMBL Accession /GB=C59637 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C59637
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C59637 C59637_rc /REP_DB=TREMBL Accession /GB=C59637 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439e9 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078268 9/11 Negative Strand Matching Probes A 
GENEFINDER00000030346 9/11 Negative Strand Matching Probes None
SNAP00000030335 10/11 Negative Strand Matching Probes None
F38E9.5.2 9/11 Negative Strand Matching Probes A 
F38E9.5.1 9/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16447841-16448779(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174302_AT
tcgtgctcaatgtaacactgtccgaattcgcttttgaatgtagcacatgtggcggccaga
agcatcttttcacggactggagcacgatcgtcgacaaacctgtgatcaaaacccattctg
tgatggtattcaaccggaacagaatgaagcacggctcgtaggcatccacacagtccggca
agcaagccctccagtcgtcacgccagttggcggttccagcaaactcgtagttcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTGCTCAATGTAACACTGTCCGA 628 605 15 Antisense
AACACTGTCCGAATTCGCTTTTGAA 109 137 28 Antisense
GAATGTAGCACATGTGGCGGCCAGA 466 331 50 Antisense
GCCAGAAGCATCTTTTCACGGACTG 452 279 69 Antisense
CACGGACTGGAGCACGATCGTCGAC 135 199 85 Antisense
GCACGATCGTCGACAAACCTGTGAT 167 311 96 Antisense
AACCTGTGATCAAAACCCATTCTGT 373 147 111 Antisense
CATTCTGTGATGGTATTCAACCGGA 337 215 128 Antisense
AATGAAGCACGGCTCGTAGGCATCC 697 161 157 Antisense
TCCAGTCGTCACGCCAGTTGGCGGT 61 591 204 Antisense
GGTTCCAGCAAACTCGTAGTTCGGC 33 507 226 Antisense
Sequence Source Affymetrix Proprietary Database