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[174301_at]

Description C31981_rc /REP_DB=TREMBL Accession /GB=C31981 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk313d6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 81      6grp_total > 49      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 228.2
(1.3)
P 		134.3
(-3)
P 		164.4
(-1.6)
P 		264.6
(3)
P 		130
B 243.8
(1.3)
P 		212.9
(-0.4)
P 		165.3
(-3)
P 		274.7
(3)
P 		109
C 212.3
(-2)
P 		199.9
(-2.7)
P 		195.1
(-3)
P 		297.3
(3)
P 		102
avr 228.1
(0.1) 		182.4
(-2.6) 		174.9
(-3) 		278.9
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 321.7
(3)
P 		198.4
(-3)
P 		209.7
(-2.5)
P 		235.2
(-1.2)
P 		255.2
(-0.2)
P 		283.2
(1.1)
P 		123
B 238.2
(0)
P 		201.8
(-3)
P 		233.9
(-0.3)
P 		230.6
(-0.6)
P 		241.6
(0.3)
P 		274.4
(3)
P 		73
C 271.3
(2.2)
P 		279.9
(3)
P 		213.6
(-3)
P 		213.4
(-3)
P 		238.5
(-0.7)
P 		260.3
(1.2)
P 		67
avr 277.1
(3) 		226.7
(-2.2) 		219.1
(-3) 		226.4
(-2.2) 		245.1
(-0.3) 		272.6
(2.5) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 83.1
(3)
P 		29.1
(-3)
P 		43
(-1.5)
P 		38.7
(-1.9)
P 		54
B 77.8
(3)
P 		52.6
(-0.8)
P 		38.3
(-3)
P 		58.5
(0.1)
P 		40
C 70.3
(3)
P 		57.5
(-0.8)
P 		68
(2.3)
P 		50.1
(-3)
P 		20
avr 77.1
(3) 		46.4
(-3) 		49.8
(-2.3) 		49.1
(-2.5) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 59.3
(-0.4)
P 		70.5
(1.8)
P 		45.7
(-3)
P 		59.6
(-0.3)
P 		77
(3)
P 		68.9
(1.4)
P 		31
B 82.9
(0.4)
P 		67.2
(-1.6)
P 		56.8
(-3)
P 		61.1
(-2.4)
P 		98.2
(2.5)
P 		102.3
(3)
P 		46
C 100.6
(3)
P 		85.4
(1.4)
P 		54.4
(-1.8)
P 		42.9
(-3)
P 		77.2
(0.6)
P 		87.1
(1.6)
P 		58
avr 80.9
(2.1) 		74.4
(0.9) 		52.3
(-3) 		54.5
(-2.6) 		84.1
(2.6) 		86.1
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174301_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22180
Sequence Type Exemplar sequence
Representative Public ID C31981 NCBI
Target Description C31981_rc /REP_DB=TREMBL Accession /GB=C31981 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk313d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029262 NCBI Caenorhabditis elegans C26B9.1a (C26B9.1) mRNA, complete cds. 11/11 None
C26B9.1a ENSEMBL cdna:known chromosome:CEL140:X:5344552:5348681:1 gene:C26B9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180807 2 1 NM_001029262 174301_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5348039-5348319(+) 100.0 100.0
Public Domain and Genome References
Ensembl C26B9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82457 Hypothetical protein C26B9.1a [Caenorhabditis elegans] ref|NP_001024433.1| C26B9.1a [Caenorhabditis elegans] 0.0
blast CAE68739 Hypothetical protein CBG14669 [Caenorhabditis briggsae] 1.0E-133
blast AAP68952 Hypothetical protein C26B9.1b [Caenorhabditis elegans] ref|NP_001024434.1| C26B9.1b [Caenorhabditis elegans] 1.0E-127
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024433.1 2 203-225,230-252
C26B9.1a 2 203-225,230-252
Sequence
Target Sequence 
>C. ELEGANS:174301_AT
aatgaattcattcctttctgcaaccccatttcactctttttgtctacttgctccctctca
aaaatttcccttttttttggtttcatgctggccttctatttcaaatctcatttattgtat
cgcgtttgtgcacaattagtgcatgcgtccggagcatgttcgccgcttcaaattgcccac
aatcttctccattttctgtgttgtagctattttcctatttgatggtgccctttaaatacc
cttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGAATTCATTCCTTTCTGCAACC 500 163 15 Antisense
ATTTCACTCTTTTTGTCTACTTGCT 592 15 42 Antisense
TTCCCTTTTTTTTGGTTTCATGCTG 593 697 80 Antisense
TCATGCTGGCCTTCTATTTCAAATC 178 621 97 Antisense
TCATTTATTGTATCGCGTTTGTGCA 73 621 122 Antisense
CACAATTAGTGCATGCGTCCGGAGC 496 193 145 Antisense
TGCATGCGTCCGGAGCATGTTCGCC 249 579 154 Antisense
TTCAAATTGCCCACAATCTTCTCCA 4 687 181 Antisense
ATCTTCTCCATTTTCTGTGTTGTAG 324 31 196 Antisense
GCTATTTTCCTATTTGATGGTGCCC 430 303 220 Antisense
TGATGGTGCCCTTTAAATACCCTTT 535 565 234 Antisense
Sequence Source Affymetrix Proprietary Database