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[174299_s_at]

Description C38499_rc /REP_DB=TREMBL Accession /GB=C38499 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk494a2 : 3prime end, single read.
Cluster 6grp_total > 46      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 42.9
(3)
A 		41.6
(2.8)
A 		3.7
(-3)
A 		23.5
(0)
A 		39
B 48
(1.9)
A 		57.7
(3)
A 		3.6
(-3)
A 		36.3
(0.6)
A 		54
C 61.4
(-0.5)
A 		100.1
(3)
A 		33
(-3)
A 		51.2
(-1.4)
A 		67
avr 50.8
(1.2) 		66.5
(3) 		13.4
(-3) 		37
(-0.3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 42.5
(-1.6)
A 		84.2
(2.4)
A 		58.1
(-0.1)
A 		27.8
(-3)
A 		29.6
(-2.8)
A 		90
(3)
A 		62
B 90.7
(1.4)
P 		93.4
(1.5)
P 		50.2
(-1.1)
A 		56.4
(-0.7)
A 		17.7
(-3)
A 		118.2
(3)
P 		101
C 100.3
(3)
A 		59
(0.4)
A 		45.8
(-0.4)
A 		5.2
(-3)
A 		45.6
(-0.5)
P 		84.8
(2)
P 		95
avr 77.8
(1.2) 		78.9
(1.3) 		51.4
(-1.1) 		29.8
(-3) 		31
(-2.9) 		97.7
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 15.6
(3)
A 		9
(0.3)
A 		1
(-3)
A 		3.4
(-2)
A 		15
B 15.3
(3)
A 		14.3
(2.6)
A 		0.8
(-3)
A 		7.7
(-0.1)
A 		15
C 20.3
(0.5)
A 		28.8
(3)
A 		11.5
(-2.1)
A 		8.6
(-3)
A 		20
avr 17.1
(2.9) 		17.4
(3) 		4.4
(-3) 		6.6
(-2) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 7.8
(-2.8)
A 		29.9
(3)
A 		12.7
(-1.5)
A 		7
(-3)
A 		8.9
(-2.5)
A 		21.9
(0.9)
A 		23
B 31.6
(1)
P 		31.1
(0.9)
P 		12.2
(-2.2)
A 		14.9
(-1.7)
A 		7.2
(-3)
A 		44.1
(3)
P 		37
C 37.2
(3)
A 		18
(-0.2)
A 		11.7
(-1.2)
A 		1
(-3)
A 		14.8
(-0.7)
P 		28.4
(1.5)
P 		36
avr 25.5
(1.5) 		26.3
(1.7) 		12.2
(-1.8) 		7.6
(-3) 		10.3
(-2.3) 		31.5
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174299_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20680
Sequence Type Exemplar sequence
Representative Public ID C38499 NCBI
Target Description C38499_rc /REP_DB=TREMBL Accession /GB=C38499 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk494a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170982(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170982 NCBI Caenorhabditis elegans C33F10.13 (C33F10.13) mRNA, complete cds. 11/11 None
SNAP00000016471 ENSEMBL cdna:SNAP chromosome:CEL140:II:4826509:4826772:-1 9/11 None
C33F10.13 ENSEMBL cdna:known chromosome:CEL140:II:4826494:4827834:-1 gene:C33F10.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4826502-4826802(-) 96.33 100.0
Public Domain and Genome References
Gene Title
Ensembl C33F10.13
Entrez Gene 173831 Entrez gene
SwissProt Q95QS7 EMBL-EBI
WormBase CE29694 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740980 C33F10.13 [Caenorhabditis elegans] gb|AAL16311.1| Hypothetical protein C33F10.13 [Caenorhabditis elegans] 0.0
blast T15749 hypothetical protein C33F10.8 - Caenorhabditis elegans 0.0
blast NP_740980 C33F10.13 [Caenorhabditis elegans] gb|AAL16311.1| Hypothetical protein C33F10.13 [Caenorhabditis elegans] 1.0E-45
blast T15749 hypothetical protein C33F10.8 - Caenorhabditis elegans 2.0E-42
blast CAB04877 Hypothetical protein T27E9.8 [Caenorhabditis elegans] ref|NP_499788.1| T27E9.8 [Caenorhabditis elegans] 3.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.4E-7
Sequence
Target Sequence 
>C. ELEGANS:174299_S_AT
gattctcgatggatgtggcaggttcaaaagaagaaggaattcaacaaatattaaaacata
ttgaatatgtcacttctccagacaatcgaatacggaattttaaaacatcattcttcaatt
cgattgtttacggaaattcaaaaatggaggaagtccgaggaggaatggatattaaacgac
tggatggtacatgtgcaactcttacgtttgatcataatacacccggagatcattttgaac
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTCGATGGATGTGGCAGGTTC 634 429 36 Antisense
GATGGATGTGGCAGGTTCAAAAGAA 641 407 43 Antisense
ATATTGAATATGTCACTTCTCCAGA 89 19 93 Antisense
GTCACTTCTCCAGACAATCGAATAC 530 463 104 Antisense
ATCATTCTTCAATTCGATTGTTTAC 437 29 142 Antisense
GGAGGAAGTCCGAGGAGGAATGGAT 220 489 181 Antisense
GAATGGATATTAAACGACTGGATGG 418 333 198 Antisense
GACTGGATGGTACATGTGCAACTCT 67 377 213 Antisense
ATGTGCAACTCTTACGTTTGATCAT 431 49 226 Antisense
TACGTTTGATCATAATACACCCGGA 511 643 238 Antisense
TACACCCGGAGATCATTTTGAACGA 487 639 253 Antisense
Sequence Source Affymetrix Proprietary Database