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[174298_s_at]

Description C30868_rc /REP_DB=TREMBL Accession /GB=C30868 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk291c4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 31      4grp_highest_8_8 > 26      4grp_high_8_8 > 57      6grp_highest_nonorm > 15      6grp_total > 33      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1854
1 2 3 4 range
A 5001.1
(3)
P 		4536.2
(1.4)
P 		4691
(1.9)
P 		3233
(-3)
P 		1768
B 4528.3
(0.1)
P 		4097.9
(-2.2)
P 		5086.8
(3)
P 		3947.2
(-3)
P 		1140
C 4903.1
(2.9)
P 		3500.1
(-2.4)
P 		4918.7
(3)
P 		3344.4
(-3)
P 		1574
avr 4810.8
(2.6) 		4044.7
(-0.7) 		4898.8
(3) 		3508.2
(-3) 		1391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3311
1 2 3 4 5 6 range
A 4550
(-0.4)
P 		4962.9
(0.6)
P 		5916
(3)
P 		4732.6
(0.1)
P 		4008.5
(-1.7)
P 		3501.1
(-3)
P 		2415
B 6287.9
(1.9)
P 		5287.2
(-0.1)
P 		6812.4
(3)
P 		5015
(-0.7)
P 		5050.7
(-0.6)
P 		3879
(-3)
P 		2933
C 6182.1
(3)
P 		4707.1
(-0.6)
P 		5049.7
(0.2)
P 		3741.5
(-3)
P 		5131.5
(0.4)
P 		4209.3
(-1.8)
P 		2441
avr 5673.3
(2.3) 		4985.7
(0.3) 		5926
(3) 		4496.4
(-1.2) 		4730.2
(-0.5) 		3863.1
(-3) 		2063
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1348
1 2 3 4 range
A 1820.9
(3)
P 		984.7
(-0.7)
P 		1226.3
(0.4)
P 		473.2
(-3)
P 		1348
B 1444
(3)
P 		1012.1
(-1.3)
P 		1178.7
(0.4)
P 		841.2
(-3)
P 		603
C 1623.1
(2.5)
P 		1006.3
(-0.7)
P 		1714.3
(3)
P 		563.9
(-3)
P 		1150
avr 1629.3
(3) 		1001
(-0.8) 		1373.1
(1.5) 		626.1
(-3) 		1003

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1539
1 2 3 4 5 6 range
A 838.8
(-3)
P 		1765.1
(3)
P 		1288.4
(-0.1)
P 		1200.3
(-0.7)
P 		1209.6
(-0.6)
P 		852.4
(-2.9)
P 		926
B 2187.9
(3)
P 		1759.9
(0)
P 		1654.3
(-0.7)
P 		1328.3
(-3)
P 		2052
(2.1)
P 		1446.5
(-2.2)
P 		860
C 2291.5
(3)
P 		1436.3
(-0.3)
P 		1285.2
(-0.9)
P 		752.4
(-3)
P 		1660.5
(0.5)
P 		1409.1
(-0.4)
P 		1539
avr 1772.7
(3) 		1653.8
(1.9) 		1409.3
(-0.2) 		1093.7
(-3) 		1640.7
(1.8) 		1236
(-1.7) 		679
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174298_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21454
Sequence Type Exemplar sequence
Representative Public ID C30868 NCBI
Target Description C30868_rc /REP_DB=TREMBL Accession /GB=C30868 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk291c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027902(11), NM_001027904(11), NM_001027903(11), NM_001027905(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027902 NCBI Caenorhabditis elegans C47E12.4a (C47E12.4) mRNA, complete cds. 11/11 None
NM_001027904 NCBI Caenorhabditis elegans C47E12.4c (C47E12.4) mRNA, complete cds. 11/11 None
NM_001027903 NCBI Caenorhabditis elegans C47E12.4b (C47E12.4) mRNA, complete cds. 11/11 None
NM_001027905 NCBI Caenorhabditis elegans C47E12.4d (C47E12.4) mRNA, complete cds. 11/11 None
SNAP00000021569 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9995696:9996717:-1 11/11 None
GENEFINDER00000021590 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9995696:10001537:-1 11/11 None
C47E12.4a ENSEMBL cdna:known chromosome:CEL140:IV:9995436:9998897:-1 gene:C47E12.4 11/11 None
C47E12.4d.2 ENSEMBL cdna:known chromosome:CEL140:IV:9995696:9997565:-1 gene:C47E12.4 11/11 None
C47E12.4c.2 ENSEMBL cdna:known chromosome:CEL140:IV:9995696:9997955:-1 gene:C47E12.4 11/11 A 
C47E12.4c.1 ENSEMBL cdna:known chromosome:CEL140:IV:9995696:9998871:-1 gene:C47E12.4 11/11 A 
C47E12.4b ENSEMBL cdna:known chromosome:CEL140:IV:9995696:9997872:-1 gene:C47E12.4 11/11 A 
C47E12.4d.1 ENSEMBL cdna:known chromosome:CEL140:IV:9995696:9996763:-1 gene:C47E12.4 11/11 None
C47E12.4c.3 ENSEMBL cdna:known chromosome:CEL140:IV:9995696:9997935:-1 gene:C47E12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9995504-9995920(-) 100.0 100.0
Public Domain and Genome References
Ensembl C47E12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD89728 Hypothetical protein C47E12.4a [Caenorhabditis elegans] ref|NP_001023073.1| C47E12.4a [Caenorhabditis elegans] 0.0
blast CAA93107 Hypothetical protein C47E12.4c [Caenorhabditis elegans] ref|NP_001023075.1| C47E12.4c [Caenorhabditis elegans] 0.0
blast CAD89726 Hypothetical protein C47E12.4b [Caenorhabditis elegans] ref|NP_001023074.1| C47E12.4b [Caenorhabditis elegans] sp|Q18680|IPYR_CAEEL Probable inorganic pyrophosphatase (Pyrophosphate phospho-hydrolase) (PPase) 0.0
blast CAE59951 Hypothetical protein CBG03439 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008162 EMBL-EBI Inorganic pyrophosphatase 1.2E-102
Pfam IPR008162 EMBL-EBI Inorganic pyrophosphatase 1.2E-102
Pfam IPR008162 EMBL-EBI Inorganic pyrophosphatase 1.2E-102
Pfam IPR008162 EMBL-EBI Inorganic pyrophosphatase 1.2E-102
Pfam IPR008162 EMBL-EBI Inorganic pyrophosphatase 1.2E-102
Pfam IPR001382 EMBL-EBI Glycoside hydrolase, family 47 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023073.1 1 13-30
C47E12.4a 1 13-30
Sequence
Target Sequence 
>C. ELEGANS:174298_S_AT
gaagactctcatcaaggaagcaaacccatccttgaacactctctcgggttccagaagctg
ttcaccaaggaactgatgaagcggccgcaactgccattggcgctaccccagaacatggag
caaatgctccactaccaggagatgttgataagtggcattttgtgcaaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACTCTCATCAAGGAAGCAAAC 667 339 13 Antisense
AAGGAAGCAAACCCATCCTTGAACA 440 161 26 Antisense
TCTCTCGGGTTCCAGAAGCTGTTCA 49 613 52 Antisense
GGGTTCCAGAAGCTGTTCACCAAGG 212 497 58 Antisense
GAAGCTGTTCACCAAGGAACTGATG 223 343 66 Antisense
AGGAACTGATGAAGCGGCCGCAACT 231 53 80 Antisense
AACTGATGAAGCGGCCGCAACTGCC 579 141 83 Antisense
GCGCTACCCCAGAACATGGAGCAAA 29 289 112 Antisense
GGAGCAAATGCTCCACTACCAGGAG 207 521 129 Antisense
AATGCTCCACTACCAGGAGATGTTG 587 165 135 Antisense
GATAAGTGGCATTTTGTGCAAGGAT 282 423 159 Antisense
Sequence Source Affymetrix Proprietary Database