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[174297_at]

Description C30868_rc /REP_DB=TREMBL Accession /GB=C30868 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk291c4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 50      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 28      6grp_total > 60      4grp_total > 63      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3316
1 2 3 4 range
A 8088.6
(3)
P 		4891.2
(-3)
P 		7791.1
(2.4)
P 		6774.3
(0.5)
P 		3197
B 8043.8
(3)
P 		6842.2
(-2.9)
P 		7023.2
(-2)
P 		6824.8
(-3)
P 		1219
C 8206.9
(3)
P 		7308.2
(1)
P 		7455.1
(1.4)
P 		5447.8
(-3)
P 		2759
avr 8113.1
(3) 		6347.2
(-3) 		7423.1
(0.7) 		6349
(-3) 		1766

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5087
1 2 3 4 5 6 range
A 12550.4
(3)
P 		8524.2
(-3)
P 		10751.1
(0.3)
P 		9914.4
(-0.9)
P 		10541.9
(0)
P 		8950.5
(-2.4)
P 		4026
B 10570.1
(1.3)
P 		8479.1
(-2)
P 		11656
(3)
P 		11047.5
(2)
P 		8585.7
(-1.8)
P 		7855.6
(-3)
P 		3800
C 7536
(-3)
P 		8873
(-1.4)
P 		10600
(0.6)
P 		12622.6
(3)
P 		7927.8
(-2.5)
P 		8284.9
(-2.1)
P 		5087
avr 10218.8
(0.9) 		8625.4
(-2.4) 		11002.4
(2.6) 		11194.8
(3) 		9018.5
(-1.6) 		8363.7
(-3) 		2831
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2027
1 2 3 4 range
A 2945.1
(3)
P 		1061.7
(-2.8)
P 		2036.7
(0.2)
P 		991.6
(-3)
P 		1954
B 2565.1
(3)
P 		1689.9
(-1.7)
P 		1627.4
(-2.1)
P 		1454.4
(-3)
P 		1111
C 2716.7
(3)
P 		2101.1
(0.9)
P 		2598.3
(2.6)
P 		918.6
(-3)
P 		1798
avr 2742.3
(3) 		1617.6
(-1.2) 		2087.5
(0.6) 		1121.5
(-3) 		1621

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1499
1 2 3 4 5 6 range
A 2313.6
(-2.2)
P 		3031.6
(2.1)
P 		2341.4
(-2)
P 		2514.5
(-1)
P 		3181.1
(3)
P 		2179.2
(-3)
P 		1002
B 3677.9
(3)
P 		2822.3
(-3)
P 		2830.4
(-2.9)
P 		2926.1
(-2.3)
P 		3488.3
(1.7)
P 		2929.3
(-2.2)
P 		856
C 2793.3
(3)
P 		2707.4
(1)
P 		2697.9
(0.8)
P 		2538.4
(-3)
P 		2565.3
(-2.4)
P 		2773.4
(2.5)
P 		255
avr 2928.3
(1) 		2853.8
(0) 		2623.2
(-3) 		2659.7
(-2.5) 		3078.2
(3) 		2627.3
(-2.9) 		455
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174297_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21454
Sequence Type Exemplar sequence
Representative Public ID C30868 NCBI
Target Description C30868_rc /REP_DB=TREMBL Accession /GB=C30868 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk291c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027902(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027902 NCBI Caenorhabditis elegans C47E12.4a (C47E12.4) mRNA, complete cds. 11/11 None
C47E12.4a ENSEMBL cdna:known chromosome:CEL140:IV:9995436:9998897:-1 gene:C47E12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177856 4 1 NM_001027902 174297_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9995504-9995920(-) 100.0 100.0
Public Domain and Genome References
Ensembl C47E12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD89728 Hypothetical protein C47E12.4a [Caenorhabditis elegans] ref|NP_001023073.1| C47E12.4a [Caenorhabditis elegans] 0.0
blast CAA93107 Hypothetical protein C47E12.4c [Caenorhabditis elegans] ref|NP_001023075.1| C47E12.4c [Caenorhabditis elegans] 0.0
blast CAD89726 Hypothetical protein C47E12.4b [Caenorhabditis elegans] ref|NP_001023074.1| C47E12.4b [Caenorhabditis elegans] sp|Q18680|IPYR_CAEEL Probable inorganic pyrophosphatase (Pyrophosphate phospho-hydrolase) (PPase) 1.0E-180
Protein Domains
Database ID Description E-Value
Pfam IPR008162 EMBL-EBI Inorganic pyrophosphatase 1.2E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023073.1 1 13-30
C47E12.4a 1 13-30
Sequence
Target Sequence 
>C. ELEGANS:174297_AT
gtgcaaggatgactagtacgccctggaagccgtgaagcatcttcaaaactttaaatttat
tgcactgtcgctccctgaaattatactgactccctcattctcttgttttgttccaacgta
tttgattatttgattcctttaattttatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCAAGGATGACTAGTACGCCCTG 179 481 174 Antisense
AGGATGACTAGTACGCCCTGGAAGC 60 55 179 Antisense
CTAGTACGCCCTGGAAGCCGTGAAG 561 221 186 Antisense
GCCCTGGAAGCCGTGAAGCATCTTC 343 287 193 Antisense
GAAGCATCTTCAAAACTTTAAATTT 502 339 207 Antisense
CTGTCGCTCCCTGAAATTATACTGA 498 239 238 Antisense
GCTCCCTGAAATTATACTGACTCCC 507 299 243 Antisense
GAAATTATACTGACTCCCTCATTCT 533 361 250 Antisense
CTCTTGTTTTGTTCCAACGTATTTG 670 227 273 Antisense
AACGTATTTGATTATTTGATTCCTT 18 145 288 Antisense
TATTTGATTCCTTTAATTTTATATT 401 661 300 Antisense
Sequence Source Affymetrix Proprietary Database