[Home] | [Total List]

[174296_at]

Description C55978_rc /REP_DB=TREMBL Accession /GB=C55978 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk232c9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 91      6grp_total > 97      4grp_total > 59      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 193.2
(2.9)
P 		182.6
(0.9)
P 		194
(3)
P 		161.8
(-3)
P 		32
B 179
(-1.1)
P 		208
(1.3)
P 		228.4
(3)
P 		155.3
(-3)
P 		73
C 177.5
(0.3)
P 		185.4
(0.7)
P 		230.5
(3)
P 		113.7
(-3)
P 		117
avr 183.2
(0.2) 		192
(0.9) 		217.6
(3) 		143.6
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 127.4
(-3)
P 		187.3
(-1.5)
P 		180.2
(-1.7)
P 		190.2
(-1.4)
P 		249.3
(0.1)
P 		362.7
(3)
P 		235
B 180.4
(-2.4)
P 		172.2
(-2.6)
P 		153
(-3)
P 		250.5
(-0.8)
P 		335.2
(1.1)
P 		417.5
(3)
P 		265
C 183.3
(-3)
P 		189.3
(-2.8)
P 		186.1
(-2.9)
P 		221
(-1.9)
P 		351.2
(1.9)
P 		387.7
(3)
P 		204
avr 163.7
(-3) 		182.9
(-2.5) 		173.1
(-2.8) 		220.6
(-1.5) 		311.9
(0.9) 		389.3
(3) 		226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 70.4
(3)
P 		39.6
(-1)
P 		50.7
(0.5)
P 		23.7
(-3)
P 		47
B 57.1
(3)
P 		51.4
(1.6)
P 		52.9
(2)
P 		33.1
(-3)
P 		24
C 58.8
(0.9)
P 		53.3
(0.3)
P 		80.3
(3)
P 		19.2
(-3)
P 		61
avr 62.1
(3) 		48.1
(0.7) 		61.3
(2.9) 		25.3
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 23.5
(-3)
P 		66.6
(1)
P 		39.2
(-1.5)
P 		48.2
(-0.7)
P 		75.2
(1.8)
P 		88.3
(3)
P 		65
B 62.8
(-1.7)
P 		57.3
(-2)
P 		37.1
(-3)
P 		66.4
(-1.5)
P 		136.2
(2)
P 		155.7
(3)
P 		119
C 67.9
(-1.3)
P 		57.8
(-2.1)
P 		47.4
(-2.8)
P 		44.4
(-3)
P 		113.7
(1.9)
P 		129.8
(3)
P 		85
avr 51.4
(-2.3) 		60.6
(-1.6) 		41.2
(-3) 		53
(-2.2) 		108.4
(1.8) 		124.6
(3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174296_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21252
Sequence Type Exemplar sequence
Representative Public ID C55978 NCBI
Target Description C55978_rc /REP_DB=TREMBL Accession /GB=C55978 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk232c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064801(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064801 NCBI Caenorhabditis elegans F10C5.2 (F10C5.2) mRNA, complete cds. 11/11 None
F10C5.2 ENSEMBL cdna:known chromosome:CEL140:III:472316:475344:1 gene:F10C5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005004 6/11 Cross Hyb Matching Probes None
GENEFINDER00000005007 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:474924-475281(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10C5.2
Entrez Gene 175204 Entrez gene
SwissProt Q19293 EMBL-EBI
WormBase CE37715 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSGENOME1:141836_AT dm
DROSOPHILA_2:1641424_AT dm
DROSGENOME1:154872_AT dm
Protein Similarities
Method ID Description E-Value
blast AAK68877 Hypothetical protein F10C5.2 [Caenorhabditis elegans] ref|NP_497202.2| F10C5.2 [Caenorhabditis elegans] 0.0
blast CAE69170 Hypothetical protein CBG15202 [Caenorhabditis briggsae] 0.0
blast T16022 hypothetical protein F10C5.2 - Caenorhabditis elegans 2.0E-91
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497202.2 6 135-153,160-182,192-212,225-242,257-275,282-304
F10C5.2 6 135-153,160-182,192-212,225-242,257-275,282-304
Sequence
Target Sequence 
>C. ELEGANS:174296_AT
agaatggacgtgttgaaggaccatcgagctctactgcttctggaatgacgccaagcgaat
atatgcggaaggcgagaaggatcgatgcgacgtcgaagacaccgacaaggaaatcccggc
atccgactgaatcggaggacgccgacgaataattggactgaaaatacggaaaattttgtg
aatttccttgaaaatttccgaatttttcgcttctaaatttcctgatctacccggtttcgc
atttgccattttcatttctccctttccaatatttctaaaacttatttttgcgacttttat
tctttattcatatgccgaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATGGACGTGTTGAAGGACCATC 264 75 18 Antisense
GCTTCTGGAATGACGCCAAGCGAAT 398 303 53 Antisense
GGATCGATGCGACGTCGAAGACACC 336 513 96 Antisense
GACACCGACAAGGAAATCCCGGCAT 567 365 115 Antisense
AATCCCGGCATCCGACTGAATCGGA 354 167 129 Antisense
GACTGAATCGGAGGACGCCGACGAA 67 375 142 Antisense
GGACGCCGACGAATAATTGGACTGA 443 523 154 Antisense
TTTCGCTTCTAAATTTCCTGATCTA 68 671 222 Antisense
TTCGCATTTGCCATTTTCATTTCTC 375 697 253 Antisense
TATTTTTGCGACTTTTATTCTTTAT 676 661 300 Antisense
TATTCTTTATTCATATGCCGAAATT 442 661 315 Antisense
Sequence Source Affymetrix Proprietary Database