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[174294_at]

Description C29800_rc /REP_DB=TREMBL Accession /GB=C29800 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk213g5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 80      6grp_total > 92      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 448
1 2 3 4 range
A 20.7
(-3)
A 		466.5
(3)
P 		399.3
(2.1)
P 		31.8
(-2.9)
A 		446
B 25.6
(-2.9)
A 		299.9
(1.4)
P 		399.1
(3)
P 		18.2
(-3)
A 		381
C 20.1
(-3)
A 		397.4
(2.9)
P 		406.8
(3)
P 		23.9
(-2.9)
A 		387
avr 22.1
(-3) 		387.9
(2.8) 		401.7
(3) 		24.6
(-3) 		380

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 170
(-2.6)
P 		189.1
(-1.7)
P 		196.5
(-1.4)
P 		218.7
(-0.4)
P 		292.9
(3)
P 		160.4
(-3)
P 		133
B 145.7
(-2)
P 		262
(1.6)
P 		117
(-2.9)
P 		305.5
(3)
P 		268.1
(1.8)
P 		112.4
(-3)
P 		193
C 136.8
(-2.7)
P 		240.4
(2.8)
P 		131.7
(-2.9)
P 		195.9
(0.5)
P 		244.4
(3)
P 		130.2
(-3)
P 		114
avr 150.8
(-2.3) 		230.5
(1.3) 		148.4
(-2.4) 		240
(1.7) 		268.5
(3) 		134.3
(-3) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 7.5
(-2.8)
A 		101.3
(2.8)
P 		104.4
(3)
P 		4.6
(-3)
A 		100
B 8.2
(-2.7)
A 		74.1
(1.8)
P 		92.5
(3)
P 		3.9
(-3)
A 		89
C 6.7
(-2.9)
A 		114.3
(1.8)
P 		141.8
(3)
P 		4
(-3)
A 		138
avr 7.5
(-2.8) 		96.6
(2.1) 		112.9
(3) 		4.2
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 31.3
(-3)
P 		67.3
(0.8)
P 		42.8
(-1.8)
P 		55.5
(-0.5)
P 		88.4
(3)
P 		39.1
(-2.2)
P 		57
B 50.7
(-1.3)
P 		87.2
(1.4)
P 		28.4
(-3)
P 		80.9
(0.9)
P 		108.9
(3)
P 		41.9
(-2)
P 		81
C 50.7
(-0.7)
P 		73.4
(2.3)
P 		33.5
(-3)
P 		39.4
(-2.2)
P 		79.1
(3)
P 		43.6
(-1.7)
P 		46
avr 44.2
(-2) 		76
(1.3) 		34.9
(-3) 		58.6
(-0.5) 		92.1
(3) 		41.5
(-2.3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174294_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22079
Sequence Type Exemplar sequence
Representative Public ID C29800 NCBI
Target Description C29800_rc /REP_DB=TREMBL Accession /GB=C29800 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk213g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171687 NCBI Caenorhabditis elegans C25F6.7a (C25F6.7) mRNA, complete cds. 11/11 None
C25F6.7a ENSEMBL cdna:known chromosome:CEL140:X:5445034:5448034:1 gene:C25F6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180816 2 1 NM_171687 174294_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5447654-5448025(+) 82.48 100.0
Public Domain and Genome References
Ensembl C25F6.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39198 Hypothetical protein C25F6.7a [Caenorhabditis elegans] ref|NP_741791.1| C25F6.7a [Caenorhabditis elegans] 1.0E-173
blast AAM51521 Hypothetical protein C25F6.7b [Caenorhabditis elegans] ref|NP_741792.1| C25F6.7b [Caenorhabditis elegans] 1.0E-171
blast CAE68752 Hypothetical protein CBG14684 [Caenorhabditis briggsae] 1.0E-156
Protein Domains
Database ID Description E-Value
Pfam IPR007084 EMBL-EBI BRICHOS 2.2E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741791.1 1 118-140
C25F6.7a 1 118-140
Sequence
Target Sequence 
>C. ELEGANS:174294_AT
tattgttctgaacggtacggtggttttgagaactgttctttgactatatatatgcagcta
acaaaaaaatgttttatttatttattttttgctgacctcattcccgtccattttccatat
tacacttttttctttttttgtatttagatgcaaattcctattttttttacaaaatatttt
ttactaaaaaaaaatcaaaacaaaaaatccttcaaaatgtttgtaagaaaatccataacc
cgttccccgttgagaacgagttttgctttcccgaaaggtactaacctgcaaatgttactc
tgtcagtaatcaccacgtgatgattaacaccctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGTTCTGAACGGTACGGTGGTT 705 659 15 Antisense
GTACGGTGGTTTTGAGAACTGTTCT 346 455 29 Antisense
GAGAACTGTTCTTTGACTATATATA 20 393 42 Antisense
TTTGACTATATATATGCAGCTAACA 263 663 53 Antisense
CCGTCCATTTTCCATATTACACTTT 471 265 118 Antisense
TTTAGATGCAAATTCCTATTTTTTT 321 671 157 Antisense
TGAGAACGAGTTTTGCTTTCCCGAA 513 553 265 Antisense
TGCTTTCCCGAAAGGTACTAACCTG 598 577 278 Antisense
AACCTGCAAATGTTACTCTGTCAGT 450 147 297 Antisense
ACTCTGTCAGTAATCACCACGTGAT 38 101 311 Antisense
ACCACGTGATGATTAACACCCTCAA 134 83 326 Antisense
Sequence Source Affymetrix Proprietary Database