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[174293_at]

Description C57019_rc /REP_DB=TREMBL Accession /GB=C57019 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk275a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 68      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 85      6grp_total > 69      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 654
1 2 3 4 range
A 626.7
(-0.2)
P 		456.4
(-3)
P 		522.8
(-1.9)
P 		821.7
(3)
P 		365
B 632.6
(-0.8)
P 		455.1
(-2.4)
P 		388.1
(-3)
P 		1041.7
(3)
P 		654
C 584
(-1.2)
P 		490.9
(-2.4)
P 		448.6
(-3)
P 		905
(3)
P 		456
avr 614.4
(-0.9) 		467.5
(-2.8) 		453.2
(-3) 		922.8
(3) 		470

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 679
1 2 3 4 5 6 range
A 838.2
(1.5)
P 		545.5
(-3)
P 		870.4
(2)
P 		633.5
(-1.7)
P 		938.7
(3)
P 		856.7
(1.7)
P 		393
B 887
(-0.1)
P 		789.2
(-1)
P 		569
(-3)
P 		784.3
(-1)
P 		730.1
(-1.5)
P 		1224.5
(3)
P 		656
C 685.3
(-1.3)
P 		834.2
(0.8)
P 		558.7
(-3)
P 		563.2
(-2.9)
P 		626.1
(-2.1)
P 		995.6
(3)
P 		437
avr 803.5
(-0.6) 		723
(-2) 		666
(-2.9) 		660.3
(-3) 		765
(-1.3) 		1025.6
(3) 		365
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 228.2
(3)
P 		99.1
(-3)
P 		136.7
(-1.3)
P 		120.3
(-2)
P 		129
B 201.7
(2.1)
P 		112.4
(-2)
P 		89.9
(-3)
P 		222
(3)
P 		132
C 193.3
(3)
P 		141.1
(-3)
P 		156.3
(-1.3)
P 		152.6
(-1.7)
P 		52
avr 207.7
(3) 		117.5
(-3) 		127.6
(-2.3) 		165
(0.2) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 154.5
(-3)
P 		194
(-1.2)
P 		189.5
(-1.4)
P 		160.7
(-2.7)
P 		283.3
(3)
P 		208.6
(-0.5)
P 		129
B 308.6
(0.2)
P 		262.7
(-0.7)
P 		138.2
(-3)
P 		207.7
(-1.7)
P 		296.6
(-0)
P 		456.6
(3)
P 		318
C 254
(0.8)
P 		254.5
(0.9)
P 		142.2
(-2.2)
P 		113.3
(-3)
P 		202.6
(-0.6)
P 		333.3
(3)
P 		220
avr 239
(-0.2) 		237.1
(-0.3) 		156.6
(-3) 		160.6
(-2.9) 		260.8
(0.5) 		332.8
(3) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174293_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21617
Sequence Type Exemplar sequence
Representative Public ID C57019 NCBI
Target Description C57019_rc /REP_DB=TREMBL Accession /GB=C57019 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk275a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068428(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068428 NCBI Caenorhabditis elegans T12E12.1 (T12E12.1) mRNA, complete cds. 11/11 None
T12E12.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:5551120:5558808:1 gene:T12E12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5558455-5558792(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12E12.1
Entrez Gene 177339 Entrez gene
SwissProt Q22431 EMBL-EBI
WormBase CE31725 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:263464_AT zinc finger protein-related at
CANINE:1601092_AT similar to Ariadne-2 protein homolog (ARI-2) (Triad1 protein) cfa
CANINE_2:CFA.14253.1.A1_AT similar to Ariadne-2 protein homolog (ARI-2) (Triad1 protein) cfa
CANINE_2:CFAAFFX.18670.1.S1_AT similar to Ariadne-2 protein homolog (ARI-2) (Triad1 protein) cfa
CANINE_2:CFAAFFX.18670.1.S1_S_AT similar to Ariadne-2 protein homolog (ARI-2) (Triad1 protein) cfa
CANINE_2:CFAAFFX.18707.1.S1_AT similar to Ariadne-2 protein homolog (ARI-2) (Triad1 protein) cfa
CANINE_2:CFAAFFX.18718.1.S1_AT similar to Ariadne-2 protein homolog (ARI-2) (Triad1 protein) cfa
CANINE_2:CFAAFFX.18718.1.S1_S_AT similar to Ariadne-2 protein homolog (ARI-2) (Triad1 protein) cfa
DROSOPHILA_2:1625556_AT ariadne 2 dm
DROSGENOME1:144051_AT ariadne 2 dm
CHICKEN:GGA.8103.2.S1_AT similar to Ariadne-2 protein homolog (ARI-2) (Triad1 protein) (HT005) gga
CHICKEN:GGA.8103.3.S1_A_AT similar to Ariadne-2 protein homolog (ARI-2) (Triad1 protein) (HT005) gga
HG-U133_PLUS_2:201230_S_AT ariadne homolog 2 (Drosophila) hs
HG-U133A:201230_S_AT ariadne homolog 2 (Drosophila) hs
HG-U133A_2:201230_S_AT ariadne homolog 2 (Drosophila) hs
HG-U133_PLUS_2:201228_S_AT ariadne homolog 2 (Drosophila) hs
HG-U133A_2:201228_S_AT ariadne homolog 2 (Drosophila) hs
HG-U133A:201228_S_AT ariadne homolog 2 (Drosophila) hs
HG-U133_PLUS_2:201229_S_AT ariadne homolog 2 (Drosophila) hs
HG-U133A:201229_S_AT ariadne homolog 2 (Drosophila) hs
HG-U133A_2:201229_S_AT ariadne homolog 2 (Drosophila) hs
HG-FOCUS:201229_S_AT ariadne homolog 2 (Drosophila) hs
HU35KSUBA:AA037199_AT ariadne homolog 2 (Drosophila) hs
HU35KSUBA:RC_AA181720_AT ariadne homolog 2 (Drosophila) hs
HU35KSUBA:RC_AA053134_AT ariadne homolog 2 (Drosophila) hs
HU35KSUBC:RC_AA037810_AT ariadne homolog 2 (Drosophila) hs
U133_X3P:G5453556_3P_A_AT ariadne homolog 2 (Drosophila) hs
U133_X3P:G12653306_3P_A_AT ariadne homolog 2 (Drosophila) hs
U133_X3P:HS.241558.2.S1_3P_A_AT ariadne homolog 2 (Drosophila) hs
U133_X3P:HS.241558.1.S1_3P_AT ariadne homolog 2 (Drosophila) hs
HG-U133A_2:216008_S_AT ariadne homolog 2 (Drosophila) hs
HG-U133_PLUS_2:216008_S_AT ariadne homolog 2 (Drosophila) hs
HG-U133A:216008_S_AT ariadne homolog 2 (Drosophila) hs
HG-U133_PLUS_2:227932_AT ariadne homolog 2 (Drosophila) hs
HG-U133B:227932_AT ariadne homolog 2 (Drosophila) hs
HG-U95AV2:39164_AT ariadne homolog 2 (Drosophila) hs
HU35KSUBD:RC_AA178953_AT Ariadne homolog 2 (Drosophila) hs
U133_X3P:HS2.416293.1.A1_3P_S_AT Ariadne homolog 2 (Drosophila) hs
U133_X3P:HS2.298624.1.A1_3P_AT Ariadne homolog 2 (Drosophila) hs
U133_X3P:HS.145319.0.A1_3P_AT Ariadne homolog 2 (Drosophila) hs
HG-U133_PLUS_2:1559121_S_AT Ariadne homolog 2 (Drosophila) hs
HG-U133_PLUS_2:1559532_AT Ariadne homolog 2 (Drosophila) hs
HG-U133_PLUS_2:238068_AT Ariadne homolog 2 (Drosophila) hs
HG-U133B:238068_AT Ariadne homolog 2 (Drosophila) hs
HG-U95E:79726_R_AT Ariadne homolog 2 (Drosophila) hs
HG-U95D:84331_AT Ariadne homolog 2 (Drosophila) hs
HG-U95D:74467_AT Ariadne homolog 2 (Drosophila) hs
HG-U95E:82727_AT Ariadne homolog 2 (Drosophila) hs
HU35KSUBC:RC_AA136879_AT Ariadne homolog 2 (Drosophila) hs
MG-U74AV2:96176_AT ariadne homolog 2 (Drosophila) mm
MOE430A:1449119_AT ariadne homolog 2 (Drosophila) mm
MOUSE430A_2:1449119_AT ariadne homolog 2 (Drosophila) mm
MOUSE430_2:1449119_AT ariadne homolog 2 (Drosophila) mm
MOUSE430_2:1445934_AT ariadne homolog 2 (Drosophila) mm
MOE430B:1445934_AT ariadne homolog 2 (Drosophila) mm
MOUSE430A_2:1455013_AT ariadne homolog 2 (Drosophila) mm
MOE430A:1455013_AT ariadne homolog 2 (Drosophila) mm
MOUSE430_2:1455013_AT ariadne homolog 2 (Drosophila) mm
MOE430A:1418523_AT ariadne homolog 2 (Drosophila) mm
MOUSE430A_2:1418523_AT ariadne homolog 2 (Drosophila) mm
MOUSE430_2:1418523_AT ariadne homolog 2 (Drosophila) mm
MU11KSUBA:AA543164_S_AT ariadne homolog 2 (Drosophila) mm
MU11KSUBA:C78813_RC_AT ariadne homolog 2 (Drosophila) mm
MG-U74AV2:95600_AT ariadne homolog 2 (Drosophila) mm
MOE430A:1454802_X_AT ariadne homolog 2 (Drosophila) mm
MOUSE430A_2:1454802_X_AT ariadne homolog 2 (Drosophila) mm
MOUSE430_2:1454802_X_AT ariadne homolog 2 (Drosophila) mm
MG-U74CV2:167711_R_AT Ariadne homolog 2 (Drosophila) (Arih2), mRNA mm
MU19KSUBC:TC40970_AT Ariadne homolog 2 (Drosophila) (Arih2), mRNA mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB03121 Hypothetical protein T12E12.1 [Caenorhabditis elegans] ref|NP_500829.2| T12E12.1 [Caenorhabditis elegans] sp|Q22431|ARI2_CAEEL Probable ariadne-2 protein (Ari-2) 0.0
blast T29562 hypothetical protein T12E12.1 - Caenorhabditis elegans 0.0
blast CAE72696 Hypothetical protein CBG19920 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 1.5E-30
Sequence
Target Sequence 
>C. ELEGANS:174293_AT
aatgggtcgatttctttatattcttttccataatctttctgtaaaactcatcgaaaaaaa
cttccccatgaatacatcacactctttaattgctccttgaccatttatctgtgatccaat
tcccgtttctcctgttctgtgaatttgaaatgttttctgtataatattttttgggattcc
tgagatctctcttttgcccatgttcatgtaggattgttttctgtgtatttccatcatttc
ttgattttttttgtcctgttcacacatactcatttatagtgcctttctcatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGGTCGATTTCTTTATATTCTT 485 163 26 Antisense
TCGATTTCTTTATATTCTTTTCCAT 273 603 32 Antisense
TAATTGCTCCTTGACCATTTATCTG 680 633 112 Antisense
TCCTTGACCATTTATCTGTGATCCA 436 591 119 Antisense
GGATTCCTGAGATCTCTCTTTTGCC 385 509 199 Antisense
TCTCTTTTGCCCATGTTCATGTAGG 657 611 213 Antisense
GTTCATGTAGGATTGTTTTCTGTGT 113 445 227 Antisense
GTTTTCTGTGTATTTCCATCATTTC 283 449 241 Antisense
TGATTTTTTTTGTCCTGTTCACACA 261 565 267 Antisense
TGTCCTGTTCACACATACTCATTTA 233 557 277 Antisense
TCATTTATAGTGCCTTTCTCATTTG 543 619 295 Antisense
Sequence Source Affymetrix Proprietary Database