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[174292_at]

Description C38648_rc /REP_DB=TREMBL Accession /GB=C38648 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk496c6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 59      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 81      6grp_total > 39      4grp_total > 31      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 252.4
(3)
P 		170.9
(-2.7)
P 		194.4
(-1.1)
P 		167.1
(-3)
P 		85
B 275.8
(3)
P 		137.6
(-3)
P 		162.8
(-1.9)
P 		238.1
(1.4)
P 		138
C 254.9
(3)
P 		192.3
(-3)
P 		200.2
(-2.2)
P 		246.7
(2.2)
P 		63
avr 261
(3) 		166.9
(-3) 		185.8
(-1.8) 		217.3
(0.2) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 214.9
(-1.3)
P 		178.8
(-3)
P 		266.4
(1)
P 		215.2
(-1.3)
P 		309
(3)
P 		195.3
(-2.2)
P 		130
B 298.4
(1.9)
P 		294
(1.8)
P 		194.3
(-2)
P 		168.2
(-3)
P 		326.9
(3)
P 		297
(1.9)
P 		159
C 314.3
(3)
P 		291.8
(2.1)
P 		165.3
(-2.9)
P 		162
(-3)
P 		310.7
(2.9)
P 		286.3
(1.9)
P 		152
avr 275.9
(1.2) 		254.9
(0.3) 		208.7
(-1.8) 		181.8
(-3) 		315.5
(3) 		259.5
(0.5) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 91.9
(3)
P 		37.1
(-1.9)
P 		50.8
(-0.7)
P 		24.5
(-3)
P 		67
B 87.9
(3)
P 		34
(-3)
P 		37.7
(-2.6)
P 		50.7
(-1.1)
P 		54
C 84.4
(3)
P 		55.3
(-1.1)
P 		69.8
(1)
P 		41.6
(-3)
P 		43
avr 88.1
(3) 		42.1
(-2.6) 		52.8
(-1.3) 		38.9
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 39.6
(-3)
P 		63.6
(-0.3)
P 		58
(-0.9)
P 		54.6
(-1.3)
P 		93.2
(3)
P 		47.5
(-2.1)
P 		54
B 103.8
(1)
P 		97.9
(0.6)
P 		47.2
(-2.8)
P 		44.5
(-3)
P 		132.8
(3)
P 		110.7
(1.5)
P 		88
C 116.5
(3)
P 		89
(1)
P 		42.1
(-2.3)
P 		32.6
(-3)
P 		100.5
(1.9)
P 		95.8
(1.5)
P 		84
avr 86.6
(0.9) 		83.5
(0.7) 		49.1
(-2.5) 		43.9
(-3) 		108.8
(3) 		84.7
(0.8) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174292_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21665
Sequence Type Exemplar sequence
Representative Public ID C38648 NCBI
Target Description C38648_rc /REP_DB=TREMBL Accession /GB=C38648 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk496c6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T21C9.1 ENSEMBL cdna:known chromosome:CEL140:V:10579094:10580903:-1 gene:T21C9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10579174-10579454(-) 100.0 100.0
Public Domain and Genome References
Ensembl T21C9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97330 Hypothetical protein T21C9.1 [Caenorhabditis elegans] ref|NP_505712.1| T21C9.1 [Caenorhabditis elegans] 1.0E-143
blast CAE64849 Hypothetical protein CBG09645 [Caenorhabditis briggsae] 1.0E-114
blast BAA76285.1 CsENDO-3 [Ciona savignyi] 9.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 6.1E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
T21C9.1 1 240-262
Sequence
Target Sequence 
>C. ELEGANS:174292_AT
ttcaattttctctgttattcatctgtttcacttcgtgacaatttttggtgctaagtataa
tgcgtattattgcgatgtagaataggaaaaaagtaaaattcatagataacaatcccacag
gtataaaatagaactcccagcttctcggtcaaaaaagttaatattcaaatgttctttaca
ttttatcgacgttttagtgcgagtggtgggaatattttagccttttttctctctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAATTTTCTCTGTTATTCATCTG 398 685 27 Antisense
TATTCATCTGTTTCACTTCGTGACA 686 663 42 Antisense
ACTTCGTGACAATTTTTGGTGCTAA 294 103 56 Antisense
TTTGGTGCTAAGTATAATGCGTATT 558 665 70 Antisense
TAATGCGTATTATTGCGATGTAGAA 296 635 84 Antisense
CATAGATAACAATCCCACAGGTATA 443 207 127 Antisense
AAAATAGAACTCCCAGCTTCTCGGT 18 133 151 Antisense
TCTTTACATTTTATCGACGTTTTAG 10 303 199 Antisense
GACGTTTTAGTGCGAGTGGTGGGAA 371 333 214 Antisense
GAGTGGTGGGAATATTTTAGCCTTT 540 383 227 Antisense
ATATTTTAGCCTTTTTTCTCTCTGA 152 19 238 Antisense
Sequence Source Affymetrix Proprietary Database