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[174291_s_at]

Description CEK111C2F /REP_DB=TREMBL Accession /GB=D75874 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk111c2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_highest_nonorm > 39      6grp_total > 75      4grp_total > 32      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1151
1 2 3 4 range
A 3283.1
(-3)
P 		4307.9
(2.3)
P 		4432.2
(3)
P 		4434.1
(3)
P 		1151
B 4120.3
(0)
P 		3839
(-3)
P 		4278.7
(1.7)
P 		4399.6
(3)
P 		561
C 3294.3
(-3)
P 		4016.8
(1.3)
P 		3997
(1.2)
P 		4304.5
(3)
P 		1010
avr 3565.9
(-3) 		4054.6
(0.6) 		4236
(1.9) 		4379.4
(3) 		814

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10028
1 2 3 4 5 6 range
A 4206.2
(-3)
P 		4195.9
(-3)
P 		9062.9
(2.3)
P 		7472.8
(0.6)
P 		9059.4
(2.3)
P 		9657.7
(3)
P 		5462
B 4350.4
(-3)
P 		4445
(-2.9)
P 		7759.4
(0.1)
P 		7784.5
(0.1)
P 		8199.7
(0.5)
P 		10905.6
(3)
P 		6555
C 3127.1
(-3)
P 		4666.3
(-2.1)
P 		6495.7
(-1)
P 		10638.1
(1.5)
P 		6767.2
(-0.8)
P 		13154.6
(3)
P 		10028
avr 3894.6
(-3) 		4435.7
(-2.6) 		7772.7
(0.2) 		8631.8
(0.9) 		8008.8
(0.4) 		11239.3
(3) 		7345
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 744
1 2 3 4 range
A 1195.4
(3)
P 		935.1
(0.1)
P 		1158.7
(2.6)
P 		649.1
(-3)
P 		546
B 1313.9
(3)
P 		948.2
(-2.8)
P 		991.5
(-2.1)
P 		937.5
(-3)
P 		376
C 1090.5
(0.3)
P 		1154.9
(0.9)
P 		1393.1
(3)
P 		725.8
(-3)
P 		667
avr 1199.9
(3) 		1012.7
(0.4) 		1181.1
(2.7) 		770.8
(-3) 		429

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3628
1 2 3 4 5 6 range
A 775.4
(-3)
P 		1492.3
(-0.8)
P 		1973.7
(0.7)
P 		1895.3
(0.4)
P 		2733.7
(3)
P 		2351.3
(1.8)
P 		1958
B 1513.7
(-2.9)
P 		1479.5
(-3)
P 		1884.2
(-2.1)
P 		2061.8
(-1.6)
P 		3331.4
(1.3)
P 		4066.7
(3)
P 		2587
C 1159.1
(-3)
P 		1423.8
(-2.5)
P 		1653.3
(-2.1)
P 		2139.3
(-1.2)
P 		2189.8
(-1.1)
P 		4403.6
(3)
P 		3245
avr 1149.4
(-3) 		1465.2
(-2.2) 		1837.1
(-1.3) 		2032.1
(-0.8) 		2751.6
(0.9) 		3607.2
(3) 		2458
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174291_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20700
Sequence Type Exemplar sequence
Representative Public ID CEK111C2F NCBI
Target Description CEK111C2F /REP_DB=TREMBL Accession /GB=D75874 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk111c2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182161 NCBI Caenorhabditis elegans F10G7.11 (F10G7.11) mRNA, complete cds. 11/11 None
SNAP00000035616 ENSEMBL cdna:SNAP chromosome:CEL140:II:4727380:4727849:-1 11/11 None
GENEFINDER00000035624 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4727380:4727849:-1 11/11 None
F10G7.11 ENSEMBL cdna:known chromosome:CEL140:II:4727333:4727858:-1 gene:F10G7.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4727341-4727712(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10G7.11
Entrez Gene 173815 Entrez gene
SwissProt Q86NH9 EMBL-EBI
WormBase CE33373 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_871961 F10G7.11 [Caenorhabditis elegans] gb|AAO38659.1| Hypothetical protein F10G7.11 [Caenorhabditis elegans] 9.0E-79
blast D88131 protein F10G7.10 [imported] - Caenorhabditis elegans 8.0E-75
blast CAE60637 Hypothetical protein CBG04281 [Caenorhabditis briggsae] 3.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 1.9E-41
Sequence
Target Sequence 
>C. ELEGANS:174291_S_AT
cagggccggatccagatgatactcttgacgagaagagaactggagaagatggagcatttg
cattgactggaagcacccacgagcttacttcaattgacccagttttgtatatctggcatg
agtgtagagatgagcaaactccatgctctcgcaagattaagttcgtcattccaaagaagt
acattcacggtggaaccccaactgatgagcaatgggtcaacattggagtgcttaatcttg
aaggatcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGGCCGGATCCAGATGATACTCT 422 207 16 Antisense
GCATTGACTGGAAGCACCCACGAGC 533 307 75 Antisense
CACCCACGAGCTTACTTCAATTGAC 300 199 89 Antisense
GCTTACTTCAATTGACCCAGTTTTG 370 305 98 Antisense
GTTTTGTATATCTGGCATGAGTGTA 621 447 117 Antisense
CCATGCTCTCGCAAGATTAAGTTCG 589 271 156 Antisense
GCAAGATTAAGTTCGTCATTCCAAA 451 321 166 Antisense
GAAGTACATTCACGGTGGAACCCCA 526 335 191 Antisense
GTGGAACCCCAACTGATGAGCAATG 622 489 205 Antisense
GGGTCAACATTGGAGTGCTTAATCT 132 497 229 Antisense
GAGTGCTTAATCTTGAAGGATCTTT 659 399 241 Antisense
Sequence Source Affymetrix Proprietary Database