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[174290_at]

Description C30420_rc /REP_DB=TREMBL Accession /GB=C30420 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk247c5 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 93      6grp_total > 85      4grp_total > 16      6grp_cgc > 77      6grp_high1_sub > 04      6grp_cgc_sub > 04_05_06      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 491
1 2 3 4 range
A 109.7
(-3)
A 		122.4
(-2.8)
A 		247.9
(-1.2)
P 		567.9
(3)
P 		458
B 95.7
(-3)
A 		132.7
(-1.7)
A 		213.7
(1.2)
P 		265.3
(3)
P 		170
C 77.1
(-3)
A 		178.7
(-1.4)
A 		150.9
(-1.9)
P 		462.4
(3)
P 		385
avr 94.2
(-3) 		144.6
(-2.1) 		204.2
(-1) 		431.9
(3) 		338

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 381
1 2 3 4 5 6 range
A 175.9
(0.1)
A 		88.3
(-2.6)
A 		170.1
(-0)
P 		74.5
(-3)
A 		264.3
(2.9)
P 		268.1
(3)
P 		194
B 144.9
(-3)
A 		182.7
(-1.1)
P 		148.8
(-2.8)
A 		241.4
(1.8)
P 		224.5
(0.9)
P 		266.4
(3)
P 		122
C 172.7
(-2.4)
P 		144
(-3)
A 		188.1
(-2.1)
A 		455.2
(3)
P 		220.4
(-1.5)
P 		306.3
(0.1)
P 		311
avr 164.5
(-1.9) 		138.3
(-3) 		169
(-1.7) 		257
(2) 		236.4
(1.1) 		280.3
(3) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 39.9
(-1.6)
A 		26.6
(-3)
A 		64.8
(1.1)
P 		83.1
(3)
P 		57
B 30.5
(-3)
A 		32.8
(-2.5)
A 		49.5
(1.4)
P 		56.5
(3)
P 		26
C 25.5
(-3)
A 		51.4
(-0)
A 		52.6
(0.1)
P 		78
(3)
P 		53
avr 32
(-3) 		36.9
(-2.3) 		55.6
(0.5) 		72.5
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 32.4
(-1.7)
A 		31.4
(-1.8)
A 		37
(-1.2)
P 		18.9
(-3)
A 		79.8
(3)
P 		65.3
(1.6)
P 		61
B 50.4
(-1.6)
A 		60.8
(-0.7)
P 		36.1
(-3)
A 		63.9
(-0.4)
P 		91.2
(2.2)
P 		99.3
(3)
P 		63
C 64
(-0.9)
P 		43.9
(-3)
A 		47.9
(-2.6)
A 		91.5
(1.9)
P 		71.3
(-0.2)
P 		102.5
(3)
P 		59
avr 48.9
(-1.9) 		45.4
(-2.4) 		40.3
(-3) 		58.1
(-0.8) 		80.8
(2) 		89
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174290_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22116
Sequence Type Exemplar sequence
Representative Public ID C30420 NCBI
Target Description C30420_rc /REP_DB=TREMBL Accession /GB=C30420 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk247c5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029196(11), NM_001029197(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029196 NCBI Caenorhabditis elegans Suppressor of PResenilin defect family member (spr-3) (spr-3) mRNA, complete cds. 11/11 None
NM_001029197 NCBI Caenorhabditis elegans Suppressor of PResenilin defect family member (spr-3) (spr-3) mRNA, complete cds. 11/11 None
C07A12.5b ENSEMBL cdna:known chromosome:CEL140:X:4514078:4516864:1 gene:C07A12.5 11/11 A 
C07A12.5a ENSEMBL cdna:known chromosome:CEL140:X:4514078:4516864:1 gene:C07A12.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032351 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4516504-4516783(+) 89.96 100.0
Public Domain and Genome References
Ensembl C07A12.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR30211 Suppressor of presenilin defect protein 3, isoform a [Caenorhabditis elegans] ref|NP_001024367.1| Suppressor of PResenilin defect family member (spr-3) [Caenorhabditis elegans] sp|Q17768|SPR3_CAEEL Suppressor of presenilin protein 0.0
blast T34090 hypothetical protein C07A12.5 - Caenorhabditis elegans 0.0
blast AAR30212 Suppressor of presenilin defect protein 3, isoform b [Caenorhabditis elegans] ref|NP_001024368.1| Suppressor of PResenilin defect family member (spr-3) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174290_AT
tcaatgttaggtttgtcgtttaatttttttcaaatttctaataatattcccttcccttcc
catccccgctcaaatagctgcctcatagtttagtaaatttctaaataatattatttcaat
accatcacatattgtcagcgctttctgtcatttttttaattttcattcatcctggtacct
cacttttggcacgtgtccaacaaccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATGTTAGGTTTGTCGTTTAATT 400 625 46 Antisense
TCAAATTTCTAATAATATTCCCTTC 73 629 75 Antisense
CCCGCTCAAATAGCTGCCTCATAGT 144 261 110 Antisense
ATAGCTGCCTCATAGTTTAGTAAAT 141 23 119 Antisense
AATATTATTTCAATACCATCACATA 71 175 152 Antisense
ACCATCACATATTGTCAGCGCTTTC 88 87 166 Antisense
CATATTGTCAGCGCTTTCTGTCATT 69 215 173 Antisense
GTCAGCGCTTTCTGTCATTTTTTTA 172 465 179 Antisense
AATTTTCATTCATCCTGGTACCTCA 105 175 203 Antisense
CTCACTTTTGGCACGTGTCCAACAA 620 227 224 Antisense
TTTTGGCACGTGTCCAACAACCACC 5 675 229 Antisense
Sequence Source Affymetrix Proprietary Database