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[174288_at] protein kinase

Description C57410_rc /REP_DB=TREMBL Accession /GB=C57410 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk303c1 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 05      4grp_high_8_8 > 40      6grp_total > 07      4grp_total > 54      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 126.3
(3)
P 		77.5
(-1.6)
P 		62.4
(-3)
P 		72.5
(-2.1)
A 		64
B 116.4
(3)
P 		55.8
(-3)
P 		75.2
(-1.1)
P 		72.4
(-1.4)
P 		61
C 147.9
(3)
P 		105.4
(0.7)
P 		94.1
(0.1)
P 		38.3
(-3)
A 		110
avr 130.2
(3) 		79.6
(-1.4) 		77.2
(-1.6) 		61.1
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 161.9
(3)
P 		127
(1.1)
P 		93.5
(-0.8)
P 		54.1
(-3)
P 		64.7
(-2.4)
A 		63.7
(-2.5)
A 		108
B 129.2
(3)
P 		76.7
(-0.8)
P 		82.2
(-0.4)
P 		73.8
(-1)
P 		51.4
(-2.6)
A 		45.6
(-3)
P 		84
C 139.2
(3)
P 		59.9
(-3)
A 		83.3
(-1.2)
P 		76.8
(-1.7)
A 		66.7
(-2.5)
P 		59.7
(-3)
M 		80
avr 143.4
(3) 		87.9
(-0.8) 		86.3
(-0.9) 		68.2
(-2.2) 		60.9
(-2.7) 		56.3
(-3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 46
(3)
P 		16.8
(-1.9)
P 		16.3
(-2)
P 		10.6
(-3)
A 		35
B 37.1
(3)
P 		13.8
(-3)
P 		17.4
(-2.1)
P 		15.4
(-2.6)
P 		23
C 49
(3)
P 		30.3
(0.4)
P 		32.8
(0.7)
P 		6.5
(-3)
A 		43
avr 44
(3) 		20.3
(-1.3) 		22.2
(-0.9) 		10.8
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 29.8
(0.1)
P 		45.2
(3)
P 		20.4
(-1.7)
P 		13.7
(-3)
P 		19.5
(-1.9)
A 		15.5
(-2.7)
A 		32
B 45
(3)
P 		25.5
(-1.2)
P 		20
(-2.4)
P 		19.5
(-2.5)
P 		20.9
(-2.2)
A 		17
(-3)
P 		28
C 51.6
(3)
P 		18.3
(-2.5)
A 		21.2
(-2)
P 		15.4
(-3)
A 		21.6
(-2)
P 		20
(-2.2)
M 		36
avr 42.1
(3) 		29.7
(0.1) 		20.5
(-2) 		16.2
(-3) 		20.7
(-2) 		17.5
(-2.7) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174288_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21796
Sequence Type Exemplar sequence
Representative Public ID C57410 NCBI
Target Description C57410_rc /REP_DB=TREMBL Accession /GB=C57410 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk303c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072627(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072627 NCBI Caenorhabditis elegans F40A3.5 (F40A3.5) mRNA, complete cds. 11/11 A 
F40A3.5 ENSEMBL cdna:known chromosome:CEL140:V:7871128:7873306:-1 gene:F40A3.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025354 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7871138-7871418(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl F40A3.5
Entrez Gene 179167 Entrez gene
SwissProt O16262 EMBL-EBI
WormBase CE30783 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65324 Hypothetical protein F40A3.5 [Caenorhabditis elegans] ref|NP_505028.2| F40A3.5 [Caenorhabditis elegans] 0.0
blast CAE73162 Hypothetical protein CBG20555 [Caenorhabditis briggsae] 1.0E-173
blast CAG06663 unnamed protein product [Tetraodon nigroviridis] 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.9E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505028.2 1 20-42
F40A3.5 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:174288_AT
cattgtcaaagcgtcatccattattaatccagaagcaatggcgacaaatttgatctgaaa
atttcgaaaattgcctgccaaaaggacctggttcttttctcgtcattgctacttgattat
tcatttgtacattcttcatcatcttttttttctcatttttcctttttcattttctcattc
tcacacatcaattcattatgtcctcatatcttcctcagctctccgagccttcagactacg
acgacgagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTGTCAAAGCGTCATCCATTATT 667 217 13 Antisense
GCGTCATCCATTATTAATCCAGAAG 478 291 23 Antisense
GAAGCAATGGCGACAAATTTGATCT 627 339 44 Antisense
AATTTCGAAAATTGCCTGCCAAAAG 158 175 72 Antisense
GCCTGCCAAAAGGACCTGGTTCTTT 219 283 85 Antisense
TTCTTTTCTCGTCATTGCTACTTGA 133 691 104 Antisense
ATTCATTTGTACATTCTTCATCATC 634 11 131 Antisense
CATTTTCTCATTCTCACACATCAAT 633 215 180 Antisense
CACACATCAATTCATTATGTCCTCA 358 195 194 Antisense
TCATTATGTCCTCATATCTTCCTCA 675 619 205 Antisense
AGCCTTCAGACTACGACGACGAGCA 539 81 238 Antisense
Sequence Source Affymetrix Proprietary Database