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[174286_at]

Description C34544_rc /REP_DB=TREMBL Accession /GB=C34544 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk403g7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 40      6grp_total > 15      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 609
1 2 3 4 range
A 862.9
(3)
P 		379.9
(-2.2)
P 		304.5
(-3)
P 		350.7
(-2.5)
P 		558
B 841.7
(3)
P 		413.8
(-1.4)
P 		254.4
(-3)
P 		473.3
(-0.8)
P 		587
C 771
(3)
P 		440.6
(-1.1)
P 		285.5
(-3)
P 		393.7
(-1.7)
P 		486
avr 825.2
(3) 		411.4
(-1.6) 		281.5
(-3) 		405.9
(-1.6) 		544

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 894
1 2 3 4 5 6 range
A 854.7
(3)
P 		760.6
(2)
P 		493.6
(-0.9)
P 		362
(-2.3)
P 		369.6
(-2.3)
P 		302.1
(-3)
P 		553
B 1118.1
(3)
P 		824.4
(0.8)
P 		392.4
(-2.4)
P 		527.1
(-1.4)
P 		322.3
(-2.9)
P 		309.1
(-3)
P 		809
C 912.3
(3)
P 		654.1
(0.7)
P 		461.1
(-0.9)
P 		316.1
(-2.2)
P 		364
(-1.8)
P 		223.9
(-3)
P 		688
avr 961.7
(3) 		746.4
(1.1) 		449
(-1.5) 		401.7
(-1.9) 		352
(-2.4) 		278.4
(-3) 		683
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 314.2
(3)
P 		82.5
(-2.3)
P 		79.6
(-2.4)
P 		51.3
(-3)
P 		263
B 268.4
(3)
P 		102.2
(-1.8)
P 		58.9
(-3)
P 		100.9
(-1.8)
P 		210
C 255.2
(3)
P 		126.7
(-1.1)
P 		99.5
(-1.9)
P 		66.4
(-3)
P 		189
avr 279.3
(3) 		103.8
(-2.1) 		79.3
(-2.8) 		72.9
(-3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 157.6
(-0.4)
P 		270.5
(3)
P 		107.5
(-2)
P 		91.8
(-2.4)
P 		111.5
(-1.8)
P 		73.6
(-3)
P 		197
B 389.1
(3)
P 		274.4
(0.7)
P 		95.3
(-3)
P 		139.6
(-2.1)
P 		130.9
(-2.3)
P 		115.2
(-2.6)
P 		294
C 338.1
(3)
P 		199.6
(-0)
P 		117.3
(-1.8)
P 		63.6
(-3)
P 		117.8
(-1.8)
P 		75
(-2.8)
P 		275
avr 294.9
(3) 		248.2
(1.6) 		106.7
(-2.5) 		98.3
(-2.7) 		120.1
(-2.1) 		87.9
(-3) 		207
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174286_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22296
Sequence Type Exemplar sequence
Representative Public ID C34544 NCBI
Target Description C34544_rc /REP_DB=TREMBL Accession /GB=C34544 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk403g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F48F7.1 ENSEMBL cdna:known chromosome:CEL140:X:13951203:13956174:1 gene:F48F7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13955476-13955799(+) 100.0 100.0
Public Domain and Genome References
Ensembl F48F7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93512 Hypothetical protein F48F7.1 [Caenorhabditis elegans] emb|CAA93496.2| Hypothetical protein F48F7.1 [Caenorhabditis elegans] ref|NP_510322.2| Argonaute (plant)-Like Gene family member (alg-1) [Caenorhabditis elegans] 0.0
blast ABA18180 argonaute-like [Caenorhabditis elegans] 0.0
blast CAE63062 Hypothetical protein CBG07340 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 1.0E-57
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174286_AT
tggcattaacttcgtgattgttcacttcactcacatatttgaaaattctgacgcaatatt
tatcaccttcagttgaatatttttgcattgtgctacaatctttcattttttcttgaactc
tcaataccctgtcatcaaaaaaatcaccaatatatcttgtcaagtgcatctttccaattg
attctttcttcattcactctctcactttctttcttgcaaatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCATTAACTTCGTGATTGTTCAC 467 543 42 Antisense
GATTGTTCACTTCACTCACATATTT 86 435 57 Antisense
CGCAATATTTATCACCTTCAGTTGA 512 253 93 Antisense
GAATATTTTTGCATTGTGCTACAAT 12 327 116 Antisense
GTGCTACAATCTTTCATTTTTTCTT 627 479 131 Antisense
TTTCTTGAACTCTCAATACCCTGTC 561 671 150 Antisense
ACTCTCAATACCCTGTCATCAAAAA 111 101 158 Antisense
ATATCTTGTCAAGTGCATCTTTCCA 130 21 193 Antisense
GTGCATCTTTCCAATTGATTCTTTC 44 481 205 Antisense
AATTGATTCTTTCTTCATTCACTCT 462 179 217 Antisense
CTCTCACTTTCTTTCTTGCAAATAC 313 231 240 Antisense
Sequence Source Affymetrix Proprietary Database