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[174285_s_at]

Description CEC656_rc /REP_DB=TREMBL Accession /GB=C07656 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk156f1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 91      6grp_total > 58      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 227.1
(1.3)
P 		270
(3)
P 		187.3
(-0.2)
P 		115.8
(-3)
P 		154
B 195.6
(0.6)
P 		271.9
(3)
P 		198.9
(0.7)
P 		80.4
(-3)
P 		192
C 207.5
(0.8)
P 		248.9
(3)
P 		162.4
(-1.7)
P 		137.5
(-3)
P 		111
avr 210.1
(0.9) 		263.6
(3) 		182.9
(-0.2) 		111.2
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 200.8
(-1.1)
P 		153.8
(-1.9)
P 		98
(-2.9)
P 		93.1
(-3)
P 		146
(-2.1)
P 		439.8
(3)
P 		347
B 212.7
(-0.9)
P 		176
(-1.7)
P 		114
(-3)
P 		129
(-2.7)
P 		178.1
(-1.7)
P 		402.5
(3)
P 		289
C 228.8
(1)
P 		194.8
(-0)
P 		145
(-1.5)
P 		91.1
(-3)
P 		124.3
(-2)
P 		300.2
(3)
P 		209
avr 214.1
(-0.6) 		174.9
(-1.5) 		119
(-2.7) 		104.4
(-3) 		149.5
(-2) 		380.8
(3) 		276
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 82.7
(3)
P 		58.6
(0.8)
P 		49
(-0.1)
P 		16.9
(-3)
P 		66
B 62.4
(2.4)
P 		67.1
(3)
P 		46.1
(0.5)
P 		17.1
(-3)
P 		50
C 68.7
(2.6)
P 		71.6
(3)
P 		56.6
(1.1)
P 		23.2
(-3)
P 		48
avr 71.3
(3) 		65.8
(2.4) 		50.6
(0.6) 		19.1
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 37
(-1.9)
P 		54.7
(-0.7)
P 		21.3
(-3)
P 		23.6
(-2.8)
P 		44
(-1.4)
P 		107.1
(3)
P 		86
B 74
(-0.7)
P 		58.6
(-1.5)
P 		27.7
(-3)
P 		34.2
(-2.7)
P 		72.3
(-0.8)
P 		150.1
(3)
P 		122
C 84.8
(1.9)
P 		59.4
(-0)
P 		36.9
(-1.6)
P 		18.3
(-3)
P 		40.2
(-1.4)
P 		100.5
(3)
P 		82
avr 65.3
(-0.4) 		57.6
(-0.9) 		28.6
(-2.8) 		25.4
(-3) 		52.2
(-1.3) 		119.2
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174285_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20589
Sequence Type Exemplar sequence
Representative Public ID CEC656 NCBI
Target Description CEC656_rc /REP_DB=TREMBL Accession /GB=C07656 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk156f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027031(11), NM_001027032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027031 NCBI Caenorhabditis elegans F54D5.5a (F54D5.5) mRNA, complete cds. 11/11 None
NM_001027032 NCBI Caenorhabditis elegans F54D5.5b (F54D5.5) mRNA, complete cds. 11/11 None
SNAP00000004672 ENSEMBL cdna:SNAP chromosome:CEL140:II:11564456:11566604:-1 11/11 None
GENEFINDER00000004683 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11564456:11566604:-1 11/11 None
F54D5.5a.1 ENSEMBL cdna:known chromosome:CEL140:II:11564348:11566621:-1 gene:F54D5.5 11/11 None
F54D5.5a.2 ENSEMBL cdna:known chromosome:CEL140:II:11564456:11566758:-1 gene:F54D5.5 11/11 None
F54D5.5b ENSEMBL cdna:known chromosome:CEL140:II:11564456:11566923:-1 gene:F54D5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11565202-11565476(-) 100.0 100.0
Public Domain and Genome References
Ensembl F54D5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI46602 Hypothetical protein F54D5.5b [Caenorhabditis elegans] ref|NP_001022203.1| F54D5.5b [Caenorhabditis elegans] 0.0
blast CAA91332 Hypothetical protein F54D5.5a [Caenorhabditis elegans] ref|NP_001022202.1| F54D5.5a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174285_S_AT
atccacctccattgagcatgggctcctacccttatatgagccaatccatgaatgcttctc
accacatgtcatctaacttcatgaatagtgctccaccatcaagcaacacaccgatgacaa
tgacaagtggagccggagagtcattgataaatccgtctgatgtcagcttccttcaaaatt
cattccttcaaccaacttctcaaggtcttacgggaatgactccaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCACCTCCATTGAGCATGGGCTC 511 39 18 Antisense
TCCTACCCTTATATGAGCCAATCCA 521 591 41 Antisense
ATCCATGAATGCTTCTCACCACATG 640 39 61 Antisense
CTCACCACATGTCATCTAACTTCAT 706 227 75 Antisense
ATAGTGCTCCACCATCAAGCAACAC 352 21 102 Antisense
CAAGCAACACACCGATGACAATGAC 480 185 117 Antisense
GATAAATCCGTCTGATGTCAGCTTC 411 423 163 Antisense
GTCAGCTTCCTTCAAAATTCATTCC 616 465 179 Antisense
CAAAATTCATTCCTTCAACCAACTT 57 191 191 Antisense
CAACCAACTTCTCAAGGTCTTACGG 303 119 206 Antisense
GGTCTTACGGGAATGACTCCACCAC 337 501 221 Antisense
Sequence Source Affymetrix Proprietary Database