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[174284_s_at]

Description C36808_rc /REP_DB=TREMBL Accession /GB=C36808 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk468a1 : 3prime end, single read.
Cluster 6grp_total > 78      4grp_total > 02      6grp_cgc > 49      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 14.1
(-3)
A 		22
(-1.9)
A 		16
(-2.7)
A 		56.5
(3)
A 		42
B 10
(1.7)
A 		3.4
(-3)
A 		11.8
(3)
A 		9.5
(1.4)
A 		8
C 7.3
(-2.9)
A 		6.9
(-3)
A 		7.2
(-2.9)
A 		32.7
(3)
A 		26
avr 10.5
(-3) 		10.8
(-2.9) 		11.7
(-2.7) 		32.9
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 3.9
(-3)
A 		14.8
(-1.6)
A 		24.7
(-0.3)
A 		13.3
(-1.8)
A 		8
(-2.5)
A 		50.1
(3)
A 		46
B 9.3
(-2.6)
A 		22.3
(-0.3)
A 		7.1
(-3)
A 		7.1
(-3)
A 		38
(2.6)
A 		40.3
(3)
A 		33
C 30.4
(3)
A 		8.4
(-2.3)
A 		9.5
(-2.1)
A 		5.7
(-3)
A 		8
(-2.4)
A 		8.5
(-2.3)
A 		25
avr 14.5
(-1.6) 		15.2
(-1.4) 		13.8
(-1.7) 		8.7
(-3) 		18
(-0.7) 		33
(3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5.1
(-1.7)
A 		4.8
(-2.1)
A 		4.2
(-3)
A 		8.3
(3)
A 		4
B 3.2
(3)
A 		0.8
(-3)
A 		2.7
(1.8)
A 		2
(-0)
A 		2
C 2.4
(-2.3)
A 		2
(-3)
A 		2.5
(-2.1)
A 		5.5
(3)
A 		4
avr 3.6
(-0.6) 		2.5
(-3) 		3.1
(-1.7) 		5.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.7
(-3)
A 		5.3
(-0.6)
A 		5.4
(-0.5)
A 		3.4
(-1.6)
A 		2.4
(-2.1)
A 		12.2
(3)
A 		12
B 3.2
(-2.3)
A 		7.4
(-0.5)
A 		1.7
(-3)
A 		1.9
(-2.9)
A 		15.4
(3)
A 		15
(2.8)
A 		14
C 11.3
(3)
A 		2.6
(-2.1)
A 		2.4
(-2.2)
A 		1.1
(-3)
A 		2.6
(-2.1)
A 		2.8
(-2)
A 		10
avr 5.1
(-0.7) 		5.1
(-0.7) 		3.2
(-2.2) 		2.1
(-3) 		6.8
(0.6) 		10
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174284_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20833
Sequence Type Exemplar sequence
Representative Public ID C36808 NCBI
Target Description C36808_rc /REP_DB=TREMBL Accession /GB=C36808 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk468a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062234(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062234 NCBI Caenorhabditis elegans F12E12.4 (F12E12.4) mRNA, complete cds. 11/11 None
SNAP00000025168 ENSEMBL cdna:SNAP chromosome:CEL140:II:3732020:3733071:1 11/11 None
GENEFINDER00000025183 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3732020:3733071:1 11/11 None
F12E12.4 ENSEMBL cdna:known chromosome:CEL140:II:3731991:3733125:1 gene:F12E12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3732792-3733114(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-31
Ensembl F12E12.4
Entrez Gene 173717 Entrez gene
SwissProt Q9BLC3 EMBL-EBI
WormBase CE26807 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18928 Hypothetical protein F12E12.4 [Caenorhabditis elegans] ref|NP_494635.1| F12E12.4 [Caenorhabditis elegans] 1.0E-167
blast CAE72470 Hypothetical protein CBG19644 [Caenorhabditis briggsae] 7.0E-50
blast CAE72466 Hypothetical protein CBG19640 [Caenorhabditis briggsae] 1.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.6E-17
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.8E-28
Sequence
Target Sequence 
>C. ELEGANS:174284_S_AT
gtacgattctagagcggttattgggaaatgcgagaaatttctttacaaggagtccgagaa
gtccgggaaaaagaaattggaattggcaattagatacaagttggagaaactagagattca
ctgctgcaacaccatcaaaaccatccaagatgtccgctcaattatcgctggaaacattga
tgaaatgagcccattcctgatgaagcgggtctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACGATTCTAGAGCGGTTATTGGG 98 453 14 Antisense
GAGCGGTTATTGGGAAATGCGAGAA 265 385 25 Antisense
GAGAAATTTCTTTACAAGGAGTCCG 148 389 45 Antisense
TACAAGGAGTCCGAGAAGTCCGGGA 78 641 57 Antisense
ACTAGAGATTCACTGCTGCAACACC 64 101 122 Antisense
GATTCACTGCTGCAACACCATCAAA 437 431 128 Antisense
CAACACCATCAAAACCATCCAAGAT 311 189 140 Antisense
CCATCCAAGATGTCCGCTCAATTAT 676 271 154 Antisense
GATGTCCGCTCAATTATCGCTGGAA 486 409 162 Antisense
AAATGAGCCCATTCCTGATGAAGCG 113 121 196 Antisense
GCCCATTCCTGATGAAGCGGGTCTT 458 285 202 Antisense
Sequence Source Affymetrix Proprietary Database