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[174282_at]

Description C55187_rc /REP_DB=TREMBL Accession /GB=C55187 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk430h7 : 3prime end, single read.
Cluster 6grp_total > 79      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 34.7
(1.3)
P 		38
(1.9)
M 		10.1
(-3)
A 		44.5
(3)
A 		34
B 39.9
(-1.7)
P 		82.7
(3)
P 		40.3
(-1.7)
P 		28.5
(-3)
A 		54
C 26.9
(-3)
A 		39
(3)
P 		34.4
(0.7)
P 		32.1
(-0.4)
A 		12
avr 33.8
(-1.7) 		53.2
(3) 		28.3
(-3) 		35
(-1.4) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 14.1
(-3)
A 		26.1
(-1.8)
P 		37.3
(-0.7)
A 		28.2
(-1.6)
A 		75.7
(3)
P 		57
(1.2)
P 		62
B 68.9
(1.8)
P 		50
(0.5)
P 		2.3
(-3)
A 		41.9
(-0.1)
P 		50.5
(0.5)
A 		84.8
(3)
P 		83
C 44.9
(0.8)
P 		51.8
(1.5)
P 		29.8
(-0.9)
A 		10
(-3)
A 		24.9
(-1.4)
A 		65.4
(3)
P 		55
avr 42.6
(-0.5) 		42.6
(-0.5) 		23.1
(-3) 		26.7
(-2.5) 		50.4
(0.6) 		69.1
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 12.6
(3)
P 		8.3
(0.4)
M 		2.7
(-3)
A 		6.5
(-0.7)
A 		10
B 12.7
(-0.2)
P 		20.4
(3)
P 		9.3
(-1.7)
P 		6.1
(-3)
A 		14
C 8.9
(0.2)
A 		11.2
(2.3)
P 		12
(3)
P 		5.4
(-3)
A 		7
avr 11.4
(1.4) 		13.3
(3) 		8
(-1.4) 		6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 2.6
(-3)
A 		9.3
(-1)
P 		8.1
(-1.4)
A 		7.1
(-1.7)
A 		22.9
(3)
P 		13.9
(0.3)
P 		20
B 24
(1.5)
P 		16.6
(0.1)
P 		0.6
(-3)
A 		11.1
(-1)
P 		20.5
(0.9)
A 		31.6
(3)
P 		31
C 16.7
(1.4)
P 		15.8
(1.2)
P 		7.6
(-1.3)
A 		2
(-3)
A 		8.1
(-1.2)
A 		21.9
(3)
P 		20
avr 14.4
(0.2) 		13.9
(-0) 		5.4
(-3) 		6.7
(-2.5) 		17.2
(1.1) 		22.5
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174282_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20230
Sequence Type Exemplar sequence
Representative Public ID C55187 NCBI
Target Description C55187_rc /REP_DB=TREMBL Accession /GB=C55187 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk430h7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C55187
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C55187 C55187_rc /REP_DB=TREMBL Accession /GB=C55187 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk430h7 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9988195-9988477(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174282_AT
gttggaagctgttttagcgtgtacatagtcgtattattgattaaaatatgttctctcttc
ttttcttcattttctaccggtcccaaatttcctcattcttgacgatttcatatgaattcg
agtttagaacaaacaaaacgttccgattttcctaatttatagcacatttcttctcatttt
gccctcggtttatctctttctttttgttgtttctttgtttacgtctgtagcataatattt
ttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGAAGCTGTTTTAGCGTGTACA 138 437 15 Antisense
GCTGTTTTAGCGTGTACATAGTCGT 605 295 22 Antisense
GCGTGTACATAGTCGTATTATTGAT 569 291 31 Antisense
GATTAAAATATGTTCTCTCTTCTTT 521 429 53 Antisense
CCAAATTTCCTCATTCTTGACGATT 413 275 97 Antisense
GACGATTTCATATGAATTCGAGTTT 325 379 115 Antisense
ATTTTCCTAATTTATAGCACATTTC 115 15 160 Antisense
ATTTATAGCACATTTCTTCTCATTT 271 15 169 Antisense
TTTGTTGTTTCTTTGTTTACGTCTG 555 667 217 Antisense
GTTTCTTTGTTTACGTCTGTAGCAT 56 449 223 Antisense
ACGTCTGTAGCATAATATTTTTGAA 531 93 235 Antisense
Sequence Source Affymetrix Proprietary Database