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[174280_s_at]

Description C33255_rc /REP_DB=TREMBL Accession /GB=C33255 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk343b7 : 3prime end, single read.
Cluster 6grp_total > 28      4grp_total > 32      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 7.9
(-3)
A 		10.2
(-2.7)
A 		55.3
(3)
A 		44.6
(1.6)
A 		47
B 28.5
(3)
A 		5.9
(-2.9)
A 		5.5
(-3)
A 		5.6
(-3)
A 		23
C 7.1
(3)
A 		4.9
(-0.4)
A 		5.6
(0.7)
A 		3.2
(-3)
A 		4
avr 14.5
(-0) 		7
(-3) 		22.1
(3) 		17.8
(1.3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 49.9
(3)
A 		21.3
(-1)
A 		18.6
(-1.4)
A 		7.2
(-3)
A 		9
(-2.7)
A 		11.4
(-2.4)
A 		43
B 19.5
(1.2)
A 		22
(1.9)
A 		4.7
(-2.9)
A 		4.3
(-3)
A 		10
(-1.4)
A 		26.1
(3)
A 		22
C 12.8
(-0.2)
A 		10.1
(-1)
A 		15
(0.4)
A 		11
(-0.8)
A 		23.9
(3)
A 		3.4
(-3)
A 		21
avr 27.4
(3) 		17.8
(0.1) 		12.8
(-1.4) 		7.5
(-3) 		14.3
(-0.9) 		13.6
(-1.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.9
(-2.7)
A 		2.2
(-3)
A 		14.4
(3)
A 		6.5
(-0.9)
A 		12
B 9.1
(3)
A 		1.5
(-2.8)
A 		1.3
(-2.9)
A 		1.2
(-3)
A 		8
C 2.3
(3)
A 		1.4
(0)
A 		2
(2)
A 		0.5
(-3)
A 		2
avr 4.8
(1.4) 		1.7
(-3) 		5.9
(3) 		2.7
(-1.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.2
(3)
A 		7.6
(1.7)
A 		4.1
(-1.1)
A 		1.8
(-3)
A 		2.7
(-2.3)
A 		2.8
(-2.2)
A 		7
B 6.8
(1)
A 		7.3
(1.3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		4.1
(-0.9)
A 		9.7
(3)
A 		9
C 4.7
(0.3)
A 		3.1
(-1.2)
A 		3.8
(-0.5)
A 		2.2
(-2)
A 		7.7
(3)
A 		1.1
(-3)
A 		7
avr 6.9
(3) 		6
(2) 		3
(-1.5) 		1.7
(-3) 		4.8
(0.6) 		4.5
(0.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174280_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21608
Sequence Type Exemplar sequence
Representative Public ID C33255 NCBI
Target Description C33255_rc /REP_DB=TREMBL Accession /GB=C33255 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk343b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067996(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067996 NCBI Caenorhabditis elegans Y37E11AL.8 (Y37E11AL.8) mRNA, complete cds. 11/11 None
SNAP00000035935 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3683604:3698219:-1 11/11 None
GENEFINDER00000035943 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3687837:3694711:-1 11/11 None
Y37E11AL.8 ENSEMBL cdna:known chromosome:CEL140:IV:3687378:3694711:-1 gene:Y37E11AL.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3687821-3688101(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11AL.8
Entrez Gene 177129 Entrez gene
SwissProt Q965Y0 EMBL-EBI
WormBase CE27602 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68430 Hypothetical protein Y37E11AL.8 [Caenorhabditis elegans] ref|NP_500397.1| Y37E11AL.8 [Caenorhabditis elegans] 0.0
blast CAE63783 Hypothetical protein CBG08324 [Caenorhabditis briggsae] 0.0
blast AAK68429 Methionine aminopeptidase protein 1 [Caenorhabditis elegans] ref|NP_500396.2| Methionine AminoPeptidase family member (map-1) [Caenorhabditis elegans] 0.0
blast EAL30458 GA16761-PA [Drosophila pseudoobscura] 9.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000994 EMBL-EBI Peptidase M24 6.9E-21
Sequence
Target Sequence 
>C. ELEGANS:174280_S_AT
aaggactcggatgagcttcttcgtcgatttgtgagtcgccaggacccgcaggccggagcc
attatctatggccggagcatgatgatgacgtcatcaggccgggccacactggactcggag
attgctcgggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGACTCGGATGAGCTTCTTCGTC 457 159 14 Antisense
ACTCGGATGAGCTTCTTCGTCGATT 3 99 18 Antisense
GATGAGCTTCTTCGTCGATTTGTGA 211 411 23 Antisense
GCTTCTTCGTCGATTTGTGAGTCGC 629 305 28 Antisense
CGTCGATTTGTGAGTCGCCAGGACC 238 245 35 Antisense
CGCAGGCCGGAGCCATTATCTATGG 625 253 60 Antisense
GGCCGGAGCCATTATCTATGGCCGG 206 541 64 Antisense
GGAGCCATTATCTATGGCCGGAGCA 367 521 68 Antisense
TGGCCGGAGCATGATGATGACGTCA 207 543 82 Antisense
GGCCACACTGGACTCGGAGATTGCT 25 545 115 Antisense
ACTGGACTCGGAGATTGCTCGGGCG 121 95 121 Antisense
Sequence Source Affymetrix Proprietary Database