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[174278_s_at] protein kinase /// serine/threonine protein kinase

Description CEC673_rc /REP_DB=TREMBL Accession /GB=C07673 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk156h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 96      4grp_high_8_8 > 02      6grp_highest_nonorm > 90      6grp_total > 87      4grp_total > 14      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 109
(2.5)
P 		58
(-3)
P 		70.8
(-1.6)
P 		113.8
(3)
P 		56
B 82.9
(3)
P 		77.5
(2.2)
P 		40.9
(-3)
A 		75.1
(1.9)
P 		42
C 59.8
(-1.1)
P 		44.5
(-3)
M 		64.2
(-0.5)
P 		91.9
(3)
P 		47
avr 83.9
(1.3) 		60
(-2.8) 		58.6
(-3) 		93.6
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 88
(-0.6)
P 		57.3
(-3)
P 		109.2
(1.1)
P 		92.3
(-0.2)
P 		105.3
(0.8)
P 		133
(3)
P 		76
B 75.1
(-2.5)
P 		66.7
(-3)
P 		91
(-1.5)
P 		76.3
(-2.4)
P 		123.2
(0.5)
P 		164.9
(3)
P 		98
C 40.6
(-3)
P 		95.7
(-0.1)
P 		60.3
(-1.9)
P 		75.7
(-1.1)
P 		96.9
(0)
P 		153.1
(3)
P 		113
avr 67.9
(-3) 		73.2
(-2.6) 		86.8
(-1.6) 		81.4
(-2) 		108.5
(-0) 		150.3
(3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 39.7
(3)
P 		12.6
(-3)
P 		18.5
(-1.7)
P 		16.7
(-2.1)
P 		27
B 26.4
(3)
P 		19.1
(0.4)
P 		9.5
(-3)
A 		16
(-0.7)
P 		17
C 19.8
(1.4)
P 		12.8
(-3)
M 		22.4
(3)
P 		15.5
(-1.3)
P 		10
avr 28.6
(3) 		14.8
(-3) 		16.8
(-2.1) 		16.1
(-2.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 16.2
(-3)
P 		20.4
(-1.4)
P 		23.8
(-0.2)
P 		23.4
(-0.3)
P 		31.8
(2.8)
P 		32.4
(3)
P 		16
B 26.1
(-2.1)
P 		22.2
(-2.7)
P 		22.1
(-2.7)
P 		20.2
(-3)
P 		50.1
(1.3)
P 		61.5
(3)
P 		41
C 15
(-3)
P 		29.2
(-0.6)
P 		15.4
(-2.9)
P 		15.2
(-3)
P 		31.4
(-0.3)
P 		51.2
(3)
P 		36
avr 19.1
(-3) 		23.9
(-2) 		20.4
(-2.7) 		19.6
(-2.9) 		37.8
(0.8) 		48.4
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174278_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20169
Sequence Type Exemplar sequence
Representative Public ID CEC673 NCBI
Target Description CEC673_rc /REP_DB=TREMBL Accession /GB=C07673 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk156h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059043(11), NM_059032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059043 NCBI Caenorhabditis elegans M04F3.3 (M04F3.3) mRNA, complete cds. 11/11 A 
NM_059032 NCBI Caenorhabditis elegans W09C3.1 (W09C3.1) mRNA, complete cds. 11/11 A 
SNAP00000000876 ENSEMBL cdna:SNAP chromosome:CEL140:I:4763242:4765141:-1 11/11 None
GENEFINDER00000000884 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4763242:4765022:-1 11/11 None
SNAP00000015949 ENSEMBL cdna:SNAP chromosome:CEL140:I:4718453:4719576:1 11/11 None
GENEFINDER00000015965 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4718453:4719576:1 11/11 None
W09C3.1 ENSEMBL cdna:known chromosome:CEL140:I:4717912:4719576:1 gene:W09C3.1 11/11 A 
M04F3.3 ENSEMBL cdna:known chromosome:CEL140:I:4763242:4764697:-1 gene:M04F3.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4719211-4719539(+) 100.0 100.0
chrI:4763278-4763606(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein kinase
serine/threonine protein kinase
Ensembl W09C3.1
M04F3.3
Entrez Gene 172091 Entrez gene
189309 Entrez gene
WormBase CE39108 Wormbase
CE39114 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491444 M04F3.3 [Caenorhabditis elegans] 0.0
blast AAK71382 Hypothetical protein M04F3.3 [Caenorhabditis elegans] 0.0
blast NP_491433 W09C3.1 [Caenorhabditis elegans] 0.0
blast ABA03111 Hypothetical protein W09C3.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.2E-23
Pfam IPR000719 EMBL-EBI Protein kinase 1.0E-11
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-23
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-23
Pfam IPR000719 EMBL-EBI Protein kinase 2.6E-7
Sequence
Target Sequence 
>C. ELEGANS:174278_S_AT
gaatccaccattcagaagtatcttttggcgtcattcgggagagccggagttcctggtggc
aataatttgatcatggcagagttggtggacttcttcgccaaggacgtaccactcaagaag
gcacgggaagagaagacggatgataataagaagcagtcaagaacaagatgcttggtaagc
cgaaacagccaggaagtggtggagctaatagtggagatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCCACCATTCAGAAGTATCTTT 440 329 19 Antisense
GAAGTATCTTTTGGCGTCATTCGGG 454 335 33 Antisense
TTGGCGTCATTCGGGAGAGCCGGAG 543 705 43 Antisense
GAGAGCCGGAGTTCCTGGTGGCAAT 501 393 57 Antisense
CGGAGTTCCTGGTGGCAATAATTTG 624 221 63 Antisense
TTGATCATGGCAGAGTTGGTGGACT 67 693 85 Antisense
GCCAAGGACGTACCACTCAAGAAGG 516 275 115 Antisense
GTACCACTCAAGAAGGCACGGGAAG 31 457 124 Antisense
ATGCTTGGTAAGCCGAAACAGCCAG 128 41 186 Antisense
GAAACAGCCAGGAAGTGGTGGAGCT 150 357 200 Antisense
GTGGTGGAGCTAATAGTGGAGATGC 68 489 214 Antisense
Sequence Source Affymetrix Proprietary Database