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[174277_s_at]

Description C56132_rc /REP_DB=TREMBL Accession /GB=C56132 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk233a6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 42      4grp_highest_8_8 > 11      4grp_high_8_8 > 39      6grp_highest_nonorm > 34      6grp_total > 20      4grp_total > 40      6grp_highest_sub > 03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1369
1 2 3 4 range
A 816.6
(-3)
P 		1027
(-1.9)
P 		1984.3
(3)
P 		1184
(-1.1)
P 		1168
B 615.8
(-3)
P 		1654.7
(1.7)
P 		1950.3
(3)
P 		1642
(1.6)
P 		1335
C 742.6
(-3)
P 		1726.9
(2.1)
P 		1891.5
(3)
P 		1303.4
(-0.1)
P 		1149
avr 725
(-3) 		1469.5
(0.7) 		1942
(3) 		1376.5
(0.2) 		1217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2135
1 2 3 4 5 6 range
A 957
(-3)
P 		2632.8
(2.3)
P 		2868.4
(3)
P 		2829.3
(2.9)
P 		1944.3
(0.1)
P 		1048.8
(-2.7)
P 		1911
B 1511.4
(-1.8)
P 		3092
(3)
P 		2274.9
(0.5)
P 		2529.2
(1.3)
P 		1536.5
(-1.7)
P 		1095.5
(-3)
P 		1997
C 1559.3
(-1.7)
P 		2846.6
(2.5)
P 		3016.9
(3)
P 		2279.5
(0.6)
P 		1517.2
(-1.8)
P 		1153
(-3)
P 		1864
avr 1342.6
(-2.2) 		2857.1
(3) 		2720.1
(2.5) 		2546
(1.9) 		1666
(-1.1) 		1099.1
(-3) 		1758
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 486
1 2 3 4 range
A 297.3
(-0.8)
P 		222.9
(-2.1)
P 		518.7
(3)
P 		173.3
(-3)
P 		345
B 196.4
(-3)
P 		408.7
(2)
P 		451.9
(3)
P 		349.9
(0.6)
P 		256
C 245.8
(-2.6)
P 		496.5
(0.8)
P 		659.3
(3)
P 		219.8
(-3)
P 		440
avr 246.5
(-3) 		376
(-0.4) 		543.3
(3) 		247.7
(-3) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 853
1 2 3 4 5 6 range
A 176.4
(-3)
P 		936.3
(3)
P 		624.7
(0.5)
P 		717.6
(1.3)
P 		586.7
(0.2)
P 		255.3
(-2.4)
P 		760
B 525.9
(-1.9)
P 		1029.2
(3)
P 		552.4
(-1.6)
P 		669.9
(-0.5)
P 		624.2
(-0.9)
P 		408.5
(-3)
P 		621
C 578
(-0.6)
P 		868.6
(3)
P 		767.9
(1.7)
P 		458.4
(-2.1)
P 		490.9
(-1.7)
P 		386
(-3)
P 		483
avr 426.8
(-2.2) 		944.7
(3) 		648.3
(0) 		615.3
(-0.3) 		567.3
(-0.8) 		349.9
(-3) 		595
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174277_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22213
Sequence Type Exemplar sequence
Representative Public ID C56132 NCBI
Target Description C56132_rc /REP_DB=TREMBL Accession /GB=C56132 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk233a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076558(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076558 NCBI Caenorhabditis elegans W01C8.5 (W01C8.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000032383 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5693773:5697257:-1 9/11 None
W01C8.5 ENSEMBL cdna:known chromosome:CEL140:X:5694432:5697266:-1 gene:W01C8.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5694458-5694794(-) 93.75 100.0
Public Domain and Genome References
Gene Title
Ensembl W01C8.5
Entrez Gene 180836 Entrez gene
SwissProt Q9GYG5 EMBL-EBI
WormBase CE26751 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624121_AT knickkopf dm
DROSGENOME1:149617_AT knickkopf dm
Protein Similarities
Method ID Description E-Value
blast NP_508959 W01C8.5 [Caenorhabditis elegans] gb|AAG49388.1| XG314 [Caenorhabditis elegans] gb|AAG00025.2| Hypothetical protein W01C8.5 [Caenorhabditis elegans] 0.0
blast CAE68788 Hypothetical protein CBG14733 [Caenorhabditis briggsae] 0.0
blast T26047 hypothetical protein W01C8.5 - Caenorhabditis elegans 0.0
blast T26047 hypothetical protein W01C8.5 - Caenorhabditis elegans 1.0E-168
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032383 1 564-586
Sequence
Target Sequence 
>C. ELEGANS:174277_S_AT
tcttctcccttcattctttgaattactgtattacctgttcgggacttaccattgcttttg
ttatgttttgtattttctgctgttgggaccctgccataacccaactagttccagtaggtt
attttttgtcttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTCCCTTCATTCTTTGAATTA 581 617 97 Antisense
CTCCCTTCATTCTTTGAATTACTGT 567 233 101 Antisense
GAATTACTGTATTACCTGTTCGGGA 612 323 116 Antisense
GTATTACCTGTTCGGGACTTACCAT 542 387 124 Antisense
TACCTGTTCGGGACTTACCATTGCT 262 651 128 Antisense
CGGGACTTACCATTGCTTTTGTTAT 86 243 136 Antisense
TGCTTTTGTTATGTTTTGTATTTTC 37 579 149 Antisense
GTTGGGACCCTGCCATAACCCAACT 276 435 178 Antisense
CCTGCCATAACCCAACTAGTTCCAG 60 265 186 Antisense
CCATAACCCAACTAGTTCCAGTAGG 631 265 190 Antisense
TCCAGTAGGTTATTTTTTGTCTTGA 112 591 206 Antisense
Sequence Source Affymetrix Proprietary Database