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[174276_at]

Description C58483_rc /REP_DB=TREMBL Accession /GB=C58483 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk365f7 : 3prime end, single read.
Cluster 6grp_total > 29      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 107
(-3)
A 		149.9
(-2.1)
A 		158.1
(-1.9)
A 		396.4
(3)
A 		289
B 98.9
(-2.6)
A 		148.7
(-1.2)
A 		83.4
(-3)
A 		302.7
(3)
A 		219
C 31.6
(-3)
A 		124.3
(-1)
A 		98.9
(-1.5)
A 		303.1
(3)
A 		272
avr 79.2
(-3) 		141
(-1.5) 		113.5
(-2.2) 		334.1
(3) 		255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 114.6
(3)
A 		15.4
(-3)
A 		68.5
(0.2)
A 		74.9
(0.6)
A 		108.7
(2.6)
A 		58.9
(-0.4)
A 		99
B 86.7
(-3)
A 		114.1
(2.3)
A 		111.3
(1.7)
A 		94.1
(-1.6)
A 		115.5
(2.5)
A 		117.9
(3)
A 		31
C 109.8
(3)
A 		97.4
(0.7)
A 		77
(-3)
A 		81.8
(-2.1)
A 		87.8
(-1)
A 		98.2
(0.9)
A 		33
avr 103.7
(2.9) 		75.6
(-3) 		85.6
(-0.9) 		83.6
(-1.3) 		104
(3) 		91.7
(0.4) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 38.9
(-1.5)
A 		32.5
(-3)
A 		41.3
(-0.9)
A 		58
(3)
A 		26
B 31.5
(-1.4)
A 		36.7
(-0.7)
A 		19.3
(-3)
A 		64.5
(3)
A 		45
C 10.5
(-3)
A 		35.7
(0.7)
A 		34.5
(0.5)
A 		51.1
(3)
A 		41
avr 27
(-3) 		35
(-1.4) 		31.7
(-2.1) 		57.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 21.1
(0.4)
A 		5.5
(-3)
A 		14.9
(-0.9)
A 		19
(-0)
A 		32.8
(3)
A 		14.3
(-1.1)
A 		27
B 30.2
(-1.6)
A 		38
(0.6)
A 		27
(-2.4)
A 		24.9
(-3)
A 		46.9
(3)
A 		44
(2.2)
A 		22
C 40.7
(3)
A 		29.7
(0.3)
A 		19.6
(-2.2)
A 		16.5
(-3)
A 		28.4
(-0)
A 		32.9
(1.1)
A 		24
avr 30.7
(1) 		24.4
(-1.4) 		20.5
(-2.8) 		20.1
(-3) 		36
(3) 		30.4
(0.9) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174276_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21261
Sequence Type Exemplar sequence
Representative Public ID C58483 NCBI
Target Description C58483_rc /REP_DB=TREMBL Accession /GB=C58483 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk365f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000001444 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15037311:15039330:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001474 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15038444-15038723(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE56114 Hypothetical protein CBG23720 [Caenorhabditis briggsae] 0.0
blast CAB63360 Hypothetical protein Y41E3.10 [Caenorhabditis elegans] ref|NP_502816.2| Y41E3.10 [Caenorhabditis elegans] sp|Q9U2H9|EF1B2_CAEEL Probable elongation factor 1-beta/1-delta 2 (EF-1-beta/delta 2) 4.0E-58
blast CAE75034 Hypothetical protein CBG22942 [Caenorhabditis briggsae] 4.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR001326 EMBL-EBI Elongation factor 1, beta/beta/delta chain 6.9E-48
Sequence
Target Sequence 
>C. ELEGANS:174276_AT
tctacgcccaggatctgtcgattttgttcaaaatcggtgagagcgaaggagagaagctcg
ccgtggagctcgtaaaatcgatcgctggaaattgtttagctgcgatttctgagattgaat
atcttcgatccatctgcccagatccgccactcccaaataggatctacagaattatatggc
acggcctcgagcttccgatgggacgtgaaatgtgctccagaatccatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACGCCCAGGATCTGTCGATTTT 12 615 13 Antisense
GCCCAGGATCTGTCGATTTTGTTCA 697 415 18 Antisense
AGAGAAGCTCGCCGTGGAGCTCGTA 322 67 62 Antisense
TGGAGCTCGTAAAATCGATCGCTGG 639 547 76 Antisense
GATCGCTGGAAATTGTTTAGCTGCG 647 415 92 Antisense
GTTTAGCTGCGATTTCTGAGATTGA 316 449 106 Antisense
TTGAATATCTTCGATCCATCTGCCC 150 705 127 Antisense
AGATCCGCCACTCCCAAATAGGATC 674 63 152 Antisense
ATTATATGGCACGGCCTCGAGCTTC 191 13 183 Antisense
CCTCGAGCTTCCGATGGGACGTGAA 463 265 197 Antisense
GTGAAATGTGCTCCAGAATCCATGA 70 483 217 Antisense
Sequence Source Affymetrix Proprietary Database