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[174275_at]

Description C52907_rc /REP_DB=TREMBL Accession /GB=C52907 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk286a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 57      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 84      6grp_total > 59      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2324
1 2 3 4 range
A 883.1
(-1.6)
P 		514.6
(-2.9)
P 		482.9
(-3)
P 		2175.9
(3)
P 		1693
B 712.3
(-2.2)
P 		602.4
(-2.6)
P 		484.4
(-3)
P 		2203.7
(3)
P 		1719
C 763.5
(-2.3)
P 		548.6
(-2.9)
P 		509.9
(-3)
P 		2806.5
(3)
P 		2297
avr 786.3
(-2.1) 		555.2
(-2.8) 		492.4
(-3) 		2395.4
(3) 		1903

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 641
1 2 3 4 5 6 range
A 674.8
(-0.1)
P 		502
(-1.8)
P 		368.9
(-3)
P 		515.2
(-1.6)
P 		576.6
(-1.1)
P 		1009.6
(3)
P 		641
B 882.5
(2.6)
P 		561.8
(-1)
P 		384.3
(-3)
P 		513.7
(-1.5)
P 		465.4
(-2.1)
P 		914.3
(3)
P 		530
C 865.4
(3)
P 		512
(-1.7)
P 		412.8
(-3)
P 		508
(-1.7)
P 		449.9
(-2.5)
P 		848.1
(2.8)
P 		453
avr 807.6
(1.7) 		525.3
(-1.5) 		388.7
(-3) 		512.3
(-1.6) 		497.3
(-1.8) 		924
(3) 		535
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 362
1 2 3 4 range
A 321.5
(3)
P 		111.7
(-3)
P 		126.2
(-2.6)
P 		318.5
(2.9)
P 		210
B 227.1
(-1.1)
P 		148.8
(-2.4)
P 		112.2
(-3)
P 		469.6
(3)
P 		357
C 252.7
(-1.2)
P 		157.7
(-3)
P 		177.7
(-2.6)
P 		473.2
(3)
P 		316
avr 267.1
(-0.3) 		139.4
(-3) 		138.7
(-3) 		420.4
(3) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 124.4
(-1.4)
P 		178.5
(0.6)
P 		80.3
(-3)
P 		130.7
(-1.2)
P 		174
(0.4)
P 		245.8
(3)
P 		166
B 307.1
(2.2)
P 		187
(-0.7)
P 		93.3
(-3)
P 		136.1
(-2)
P 		189.1
(-0.7)
P 		341
(3)
P 		248
C 320.8
(3)
P 		156.2
(-1.5)
P 		105.1
(-2.9)
P 		102.2
(-3)
P 		145.6
(-1.8)
P 		283.9
(2)
P 		219
avr 250.8
(1.8) 		173.9
(-0.5) 		92.9
(-3) 		123
(-2.1) 		169.6
(-0.7) 		290.2
(3) 		197
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174275_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21745
Sequence Type Exemplar sequence
Representative Public ID C52907 NCBI
Target Description C52907_rc /REP_DB=TREMBL Accession /GB=C52907 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk286a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171469(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171469 NCBI Caenorhabditis elegans K08B12.2a (K08B12.2) mRNA, complete cds. 11/11 None
K08B12.2a ENSEMBL cdna:known chromosome:CEL140:V:6251766:6255047:1 gene:K08B12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179012 2 1 NM_171469 174275_at (11), 185876_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6254701-6254974(+) 100.0 100.0
Public Domain and Genome References
Ensembl K08B12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52258 Hypothetical protein K08B12.2a [Caenorhabditis elegans] ref|NP_741551.1| K08B12.2a [Caenorhabditis elegans] 0.0
blast CAE71851 Hypothetical protein CBG18895 [Caenorhabditis briggsae] 1.0E-172
blast AAM45354 Hypothetical protein K08B12.2b [Caenorhabditis elegans] ref|NP_741552.1| K08B12.2b [Caenorhabditis elegans] 7.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR001275 EMBL-EBI DM DNA-binding 1.3E-27
Sequence
Target Sequence 
>C. ELEGANS:174275_AT
tctcttttttcgtcacctagaattggtttgctttacattgactgtgctcttcctaaaaga
accttaaccccccaacaacacatactcttttgttttgtttcctggctgatctccgttttg
actttttactgttttcatgtttttttattaaatctaaattttaatccttttctagctgta
tccagttcattattccttttgacctttcctgtctcttcacagaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCTTTTTTCGTCACCTAGAATTG 174 613 27 Antisense
GAATTGGTTTGCTTTACATTGACTG 667 323 46 Antisense
TACATTGACTGTGCTCTTCCTAAAA 122 643 60 Antisense
CTGTGCTCTTCCTAAAAGAACCTTA 494 239 68 Antisense
ACAACACATACTCTTTTGTTTTGTT 230 111 101 Antisense
GCTGATCTCCGTTTTGACTTTTTAC 8 297 131 Antisense
TGACTTTTTACTGTTTTCATGTTTT 30 565 145 Antisense
TTAATCCTTTTCTAGCTGTATCCAG 335 683 187 Antisense
AGCTGTATCCAGTTCATTATTCCTT 344 81 200 Antisense
TTCATTATTCCTTTTGACCTTTCCT 290 689 212 Antisense
ACCTTTCCTGTCTCTTCACAGAAAC 246 87 228 Antisense
Sequence Source Affymetrix Proprietary Database