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[174273_at]

Description C33643_rc /REP_DB=TREMBL Accession /GB=C33643 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk374h1 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 01      4grp_high_8_8 > 46      6grp_total > 04      4grp_total > 49      6grp_high1_sub > De      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 28
(-3)
A 		119.8
(1.8)
P 		143.9
(3)
P 		42.7
(-2.2)
P 		116
B 15.6
(-3)
A 		153.8
(2.9)
P 		155.9
(3)
P 		50.9
(-1.5)
P 		140
C 38.1
(-3)
P 		120.2
(1.2)
P 		155
(3)
P 		43.9
(-2.7)
M 		117
avr 27.2
(-3) 		131.3
(2) 		151.6
(3) 		45.8
(-2.1) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 89.2
(0.3)
P 		102.4
(1.8)
P 		71.1
(-1.7)
P 		84.7
(-0.2)
P 		113.5
(3)
P 		58.9
(-3)
M 		55
B 136
(3)
P 		106.6
(0.6)
P 		119.3
(1.6)
P 		83.7
(-1.3)
P 		73.2
(-2.1)
P 		62.2
(-3)
P 		74
C 138.6
(3)
P 		72.4
(-1)
P 		97.5
(0.5)
P 		131.3
(2.6)
P 		88.6
(-0)
P 		39.4
(-3)
P 		99
avr 121.3
(3) 		93.8
(0.6) 		96
(0.8) 		99.9
(1.1) 		91.8
(0.4) 		53.5
(-3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 10.2
(-2.3)
A 		26
(0.8)
P 		37.6
(3)
P 		6.3
(-3)
P 		31
B 5
(-3)
A 		38
(3)
P 		36.1
(2.7)
P 		10.9
(-1.9)
P 		33
C 12.6
(-2.3)
P 		34.6
(0.5)
P 		54
(3)
P 		7.4
(-3)
M 		47
avr 9.3
(-2.8) 		32.9
(1.3) 		42.6
(3) 		8.2
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 16.4
(-2.4)
P 		36.4
(3)
P 		15.5
(-2.7)
P 		21.5
(-1)
P 		34.2
(2.4)
P 		14.3
(-3)
M 		22
B 47.3
(3)
P 		35.5
(0.2)
P 		29
(-1.4)
P 		22.2
(-3)
P 		29.7
(-1.2)
P 		23.2
(-2.8)
P 		25
C 51.4
(3)
P 		22.1
(-1.6)
P 		24.8
(-1.2)
P 		26.4
(-0.9)
P 		28.7
(-0.6)
P 		13.2
(-3)
P 		38
avr 38.4
(3) 		31.3
(1) 		23.1
(-1.3) 		23.4
(-1.2) 		30.9
(0.9) 		16.9
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21259
Sequence Type Exemplar sequence
Representative Public ID C33643 NCBI
Target Description C33643_rc /REP_DB=TREMBL Accession /GB=C33643 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk374h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069480(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069480 NCBI Caenorhabditis elegans F01G10.9 (F01G10.9) mRNA, complete cds. 11/11 None
F01G10.9 ENSEMBL cdna:known chromosome:CEL140:IV:10255523:10259628:-1 gene:F01G10.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013164 2/11 Cross Hyb Matching Probes None
GENEFINDER00000013170 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10255806-10256086(-) 91.07 100.0
Public Domain and Genome References
Gene Title
Ensembl F01G10.9
Entrez Gene 177909 Entrez gene
SwissProt O17767 EMBL-EBI
WormBase CE35849 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02897 Hypothetical protein F01G10.9 [Caenorhabditis elegans] ref|NP_501881.2| F01G10.9 [Caenorhabditis elegans] 0.0
blast CAE60732 Hypothetical protein CBG04414 [Caenorhabditis briggsae] 1.0E-112
Sequence
Target Sequence 
>C. ELEGANS:174273_AT
tccaaacgccagctgtgaactcatattccattttattgattcttgtaaaagcaagaaatt
cttctaaactatgacttaatttttctcaaaatgttctctgttttctttgctcttttagtt
ttgtgctcatcctacatttaaagacatttccaacccatacgggatcatctcattttattt
atttccacaattgacacttttgtcgtcagatttctaatttattgtttcaggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAACGCCAGCTGTGAACTCATA 663 587 13 Antisense
GCTGTGAACTCATATTCCATTTTAT 616 295 24 Antisense
TTCTCAAAATGTTCTCTGTTTTCTT 398 691 95 Antisense
TCTTTGCTCTTTTAGTTTTGTGCTC 581 615 116 Antisense
GTTTTGTGCTCATCCTACATTTAAA 673 447 130 Antisense
TAAAGACATTTCCAACCCATACGGG 312 637 151 Antisense
AACCCATACGGGATCATCTCATTTT 129 147 164 Antisense
TACGGGATCATCTCATTTTATTTAT 159 649 170 Antisense
ATTTATTTCCACAATTGACACTTTT 410 15 189 Antisense
ACACTTTTGTCGTCAGATTTCTAAT 299 111 206 Antisense
GATTTCTAATTTATTGTTTCAGGTT 127 429 221 Antisense
Sequence Source Affymetrix Proprietary Database