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[174270_s_at]

Description C56023_rc /REP_DB=TREMBL Accession /GB=C56023 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk232h5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 92      6grp_total > 77      4grp_total > 05      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 230.9
(-0.5)
P 		172.2
(-3)
P 		220.8
(-1)
P 		315.5
(3)
P 		143
B 242.4
(2.3)
P 		200.9
(-2)
P 		190.8
(-3)
P 		248.8
(3)
P 		58
C 207.4
(-2.6)
P 		222.6
(-0.3)
P 		204.6
(-3)
P 		244.4
(3)
P 		40
avr 226.9
(-0.6) 		198.6
(-3) 		205.4
(-2.4) 		269.6
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 429
1 2 3 4 5 6 range
A 225.8
(-3)
P 		227
(-3)
P 		230.7
(-2.9)
P 		304.8
(-1.6)
P 		291.1
(-1.9)
P 		570.6
(3)
P 		345
B 209.4
(-2.7)
P 		192.2
(-3)
P 		221.8
(-2.5)
P 		209.9
(-2.7)
P 		262.4
(-1.9)
P 		570.5
(3)
P 		378
C 219.6
(-3)
P 		217.6
(-3)
P 		249.9
(-2.5)
P 		262.3
(-2.3)
P 		343.9
(-1.1)
P 		620.9
(3)
P 		403
avr 218.3
(-2.9) 		212.3
(-3) 		234.1
(-2.7) 		259
(-2.3) 		299.1
(-1.6) 		587.3
(3) 		375
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 84.1
(3)
P 		37.4
(-3)
P 		57.7
(-0.4)
P 		46.2
(-1.9)
P 		47
B 77.3
(3)
P 		49.6
(-2)
P 		44.2
(-3)
P 		53
(-1.4)
P 		33
C 68.7
(2.5)
P 		64
(1.5)
P 		71.3
(3)
P 		41.2
(-3)
P 		30
avr 76.7
(3) 		50.3
(-2.3) 		57.7
(-0.8) 		46.8
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 41.6
(-3)
P 		80.7
(-0.6)
P 		50.2
(-2.5)
P 		77.3
(-0.8)
P 		87.8
(-0.2)
P 		138.9
(3)
P 		97
B 72.9
(-2.3)
P 		64
(-2.6)
P 		53.9
(-3)
P 		55.6
(-2.9)
P 		106.6
(-1)
P 		212.7
(3)
P 		159
C 81.4
(-1.9)
P 		66.4
(-2.5)
P 		63.6
(-2.6)
P 		52.7
(-3)
P 		111.3
(-0.7)
P 		207.8
(3)
P 		155
avr 65.3
(-2.6) 		70.4
(-2.3) 		55.9
(-3) 		61.9
(-2.7) 		101.9
(-0.9) 		186.5
(3) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174270_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20679
Sequence Type Exemplar sequence
Representative Public ID C56023 NCBI
Target Description C56023_rc /REP_DB=TREMBL Accession /GB=C56023 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk232h5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061244(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061244 NCBI Caenorhabditis elegans F23F1.1 (F23F1.1) mRNA, complete cds. 11/11 None
F23F1.1 ENSEMBL cdna:known chromosome:CEL140:II:43945:44860:1 gene:F23F1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:44516-44850(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23F1.1
Entrez Gene 173385 Entrez gene
SwissProt O17072 EMBL-EBI
WormBase CE27996 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68346 Hypothetical protein F23F1.1 [Caenorhabditis elegans] ref|NP_493645.1| F23F1.1 [Caenorhabditis elegans] 1.0E-133
blast T32269 hypothetical protein F23F1.1 - Caenorhabditis elegans 1.0E-118
blast CAE62824 Hypothetical protein CBG07003 [Caenorhabditis briggsae] 1.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003958 EMBL-EBI Transcription factor CBF/NF-Y/archaeal histone 8.7E-23
Sequence
Target Sequence 
>C. ELEGANS:174270_S_AT
gaagaaatgaccgcaatgggctggcaatacgtgtcagaagcaaggcgacgaattcttcaa
aaagccgacatagcaagcgcagtgcaaaaaagtgatcagttcgattttctcatcgacttt
ctacctccgaaaacggtgccaacaacttccacaaacggcccaggccatatgagtgaagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAAATGACCGCAATGGGCTGGC 4 339 31 Antisense
GACCGCAATGGGCTGGCAATACGTG 143 383 39 Antisense
GGGCTGGCAATACGTGTCAGAAGCA 641 491 48 Antisense
GTGTCAGAAGCAAGGCGACGAATTC 215 487 61 Antisense
AAGCCGACATAGCAAGCGCAGTGCA 512 147 92 Antisense
AAAAGTGATCAGTTCGATTTTCTCA 93 133 118 Antisense
CGATTTTCTCATCGACTTTCTACCT 60 249 132 Antisense
TCTACCTCCGAAAACGGTGCCAACA 638 611 150 Antisense
GAAAACGGTGCCAACAACTTCCACA 163 355 159 Antisense
TTCCACAAACGGCCCAGGCCATATG 270 697 177 Antisense
CGGCCCAGGCCATATGAGTGAAGAC 371 241 186 Antisense
Sequence Source Affymetrix Proprietary Database