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[174267_at]

Description C55924_rc /REP_DB=TREMBL Accession /GB=C55924 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk231f2 : 3prime end, single read.
Cluster 6grp_total > 56      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 75.1
(3)
A 		53.2
(0.2)
A 		47.2
(-0.6)
A 		28.2
(-3)
A 		47
B 61.5
(3)
P 		19.7
(-1.3)
A 		3.1
(-3)
A 		32.4
(0)
A 		58
C 65.3
(0)
P 		16.9
(-3)
A 		24.4
(-2.5)
A 		113.6
(3)
P 		97
avr 67.3
(3) 		29.9
(-2.3) 		24.9
(-3) 		58.1
(1.7) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 49
(-1.1)
A 		21.8
(-2.4)
A 		42.6
(-1.4)
A 		9.2
(-3)
A 		11.5
(-2.9)
A 		138
(3)
M 		129
B 40.5
(-1.4)
A 		13.7
(-2.6)
A 		41
(-1.4)
A 		13.2
(-2.7)
A 		6
(-3)
A 		134.3
(3)
P 		128
C 29.8
(-1.8)
A 		44.2
(-1.2)
A 		52.7
(-0.8)
A 		18.4
(-2.3)
A 		2.4
(-3)
A 		139.4
(3)
P 		137
avr 39.8
(-1.5) 		26.6
(-2.1) 		45.4
(-1.2) 		13.6
(-2.7) 		6.6
(-3) 		137.2
(3) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 27.3
(3)
A 		11.6
(-1.1)
A 		12.3
(-0.9)
A 		4.1
(-3)
A 		23
B 19.6
(3)
P 		4.9
(-1.7)
A 		0.7
(-3)
A 		6.9
(-1)
A 		19
C 21.6
(3)
P 		4.9
(-3)
A 		8.5
(-1.7)
A 		19.2
(2.1)
P 		17
avr 22.8
(3) 		7.1
(-3) 		7.2
(-3) 		10.1
(-1.9) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 9
(-1.7)
A 		7.8
(-1.9)
A 		9.3
(-1.7)
A 		2.3
(-3)
A 		3.5
(-2.8)
A 		33.6
(3)
M 		31
B 14.1
(-1.5)
A 		4.6
(-2.7)
A 		9.9
(-2.1)
A 		3.5
(-2.9)
A 		2.4
(-3)
A 		50.1
(3)
P 		48
C 11
(-1.7)
A 		13.5
(-1.3)
A 		13.4
(-1.4)
A 		3.7
(-2.6)
A 		0.8
(-3)
A 		46.7
(3)
P 		46
avr 11.4
(-1.7) 		8.6
(-2.1) 		10.9
(-1.7) 		3.2
(-2.9) 		2.2
(-3) 		43.5
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174267_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21306
Sequence Type Exemplar sequence
Representative Public ID C55924 NCBI
Target Description C55924_rc /REP_DB=TREMBL Accession /GB=C55924 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk231f2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000006503 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12808943:12813341:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12813321-12813601(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03206 Hypothetical protein F07C6.4a [Caenorhabditis elegans] emb|CAA93487.1| Hypothetical protein F07C6.4a [Caenorhabditis elegans] ref|NP_502441.1| F07C6.4a [Caenorhabditis elegans] 3.0E-63
blast CAE74555 Hypothetical protein CBG22314 [Caenorhabditis briggsae] 3.0E-63
blast CAG11383 unnamed protein product [Tetraodon nigroviridis] 3.0E-13
Sequence
Target Sequence 
>C. ELEGANS:174267_AT
aaattcctctcacatcggtttttgttttgttttcttctttttcttcatatttgttgtttc
ttcgtctccttcttctggtgatacgaattgcgtttgtcttcaacaattcctcatcttgtc
agttgctgtcagcttctcaggtgctttcagctctaatactttttacacccctacttttca
gtgagaagttctcactatgttttctccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCCTCTCACATCGGTTTTTGT 499 113 37 Antisense
TCATATTTGTTGTTTCTTCGTCTCC 119 621 81 Antisense
TCGTCTCCTTCTTCTGGTGATACGA 115 605 98 Antisense
GATACGAATTGCGTTTGTCTTCAAC 243 423 116 Antisense
TTGTCTTCAACAATTCCTCATCTTG 41 709 130 Antisense
CAATTCCTCATCTTGTCAGTTGCTG 535 179 140 Antisense
CAGTTGCTGTCAGCTTCTCAGGTGC 62 207 156 Antisense
CTTCTCAGGTGCTTTCAGCTCTAAT 358 221 169 Antisense
CAGCTCTAATACTTTTTACACCCCT 450 203 184 Antisense
TTTACACCCCTACTTTTCAGTGAGA 646 673 198 Antisense
GAAGTTCTCACTATGTTTTCTCCAT 424 337 221 Antisense
Sequence Source Affymetrix Proprietary Database