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[174266_at]

Description C54826_rc /REP_DB=TREMBL Accession /GB=C54826 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk406e9 : 3prime end, single read.
Cluster 6grp_total > 23      4grp_total > 01      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 13.5
(-2.6)
A 		4.2
(-3)
A 		12
(-2.6)
A 		128.4
(3)
A 		124
B 31.7
(-0.6)
A 		3.9
(-3)
A 		6
(-2.8)
A 		72.7
(3)
A 		69
C 19
(-2.1)
A 		3.8
(-3)
A 		41.9
(-0.6)
A 		100.5
(3)
A 		97
avr 21.4
(-1.9) 		4
(-3) 		20
(-2) 		100.5
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 4.9
(-2.8)
A 		27.5
(0.7)
A 		42.6
(3)
A 		3.5
(-3)
A 		32.9
(1.5)
A 		3.8
(-3)
A 		39
B 31.1
(3)
A 		5.8
(-2.2)
A 		4
(-2.5)
A 		1.8
(-3)
A 		2.9
(-2.8)
A 		7.6
(-1.8)
A 		29
C 35.2
(2.7)
A 		28.6
(1.6)
A 		11.6
(-1.2)
A 		37
(3)
A 		2.6
(-2.7)
A 		1.1
(-3)
A 		36
avr 23.7
(3) 		20.6
(2) 		19.4
(1.7) 		14.1
(0) 		12.8
(-0.4) 		4.2
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 4.9
(-1.7)
A 		0.9
(-3)
A 		3.1
(-2.3)
A 		18.8
(3)
A 		18
B 10.1
(0.8)
A 		1
(-3)
A 		1.4
(-2.8)
A 		15.5
(3)
A 		15
C 6.3
(-1)
A 		1.1
(-3)
A 		14.6
(2.1)
A 		16.9
(3)
A 		16
avr 7.1
(-0.7) 		1
(-3) 		6.4
(-1) 		17.1
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.9
(-3)
A 		9.8
(2.9)
A 		9.3
(2.6)
A 		0.9
(-3)
A 		9.9
(3)
A 		0.9
(-3)
A 		9
B 10.8
(3)
A 		1.9
(-2.2)
A 		1
(-2.7)
A 		0.5
(-3)
A 		1.2
(-2.6)
A 		2.8
(-1.7)
A 		10
C 13
(3)
A 		8.7
(1)
A 		3
(-1.8)
A 		7.4
(0.3)
A 		0.9
(-2.8)
A 		0.4
(-3)
A 		13
avr 8.2
(3) 		6.8
(1.8) 		4.4
(-0.4) 		2.9
(-1.7) 		4
(-0.7) 		1.4
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174266_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22351
Sequence Type Exemplar sequence
Representative Public ID C54826 NCBI
Target Description C54826_rc /REP_DB=TREMBL Accession /GB=C54826 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk406e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K09A9.1 ENSEMBL cdna:known chromosome:CEL140:X:15607887:15611729:1 gene:K09A9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15611443-15611719(+) 100.0 100.0
Public Domain and Genome References
Ensembl K09A9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01883 Hypothetical protein K09A9.1 [Caenorhabditis elegans] ref|NP_510573.2| K09A9.1 [Caenorhabditis elegans] 0.0
blast CAE63334 Hypothetical protein CBG07734 [Caenorhabditis briggsae] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.7E-6
Sequence
Target Sequence 
>C. ELEGANS:174266_AT
ccaccccttaaatgtagtcacaaagcaaaccaacttttataaatacagtgtcggccaaaa
atatgtgcgtttttggtttttcagtgtttttttcaatcaaaattagtatatataactctg
aaaatgaaaatttcggaaaaaagcttaactaacaagctgttgctctcacttttttctaca
cactgaaatatttttcgaagcatcaaaaaaataatggcattacatacagcgcccgagatc
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCCCTTAAATGTAGTCACAAAG 178 1 14 Antisense
GTCACAAAGCAAACCAACTTTTATA 232 465 30 Antisense
ACTTTTATAAATACAGTGTCGGCCA 565 85 46 Antisense
GTGTCGGCCAAAAATATGTGCGTTT 439 481 61 Antisense
TTCAGTGTTTTTTTCAATCAAAATT 463 683 93 Antisense
AACTAACAAGCTGTTGCTCTCACTT 31 139 160 Antisense
ACAAGCTGTTGCTCTCACTTTTTTC 545 113 165 Antisense
CTCTCACTTTTTTCTACACACTGAA 314 231 176 Antisense
CACACTGAAATATTTTTCGAAGCAT 574 195 192 Antisense
AATGGCATTACATACAGCGCCCGAG 168 163 226 Antisense
GCATTACATACAGCGCCCGAGATCT 521 307 230 Antisense
Sequence Source Affymetrix Proprietary Database