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[174265_at]

Description C59032_rc /REP_DB=TREMBL Accession /GB=C59032 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk387a4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 87      6grp_total > 99      4grp_total > 05      6grp_highest_sub > Cu      6grp_cgc > 79      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1976
1 2 3 4 range
A 1597.5
(-0.3)
P 		718.2
(-3)
P 		822.5
(-2.7)
P 		2636.9
(3)
P 		1919
B 1145.3
(-1.5)
P 		719.7
(-2.8)
P 		666.2
(-3)
P 		2609.6
(3)
P 		1943
C 1400.8
(-0.5)
P 		828.3
(-2.4)
P 		661.4
(-3)
P 		2444.5
(3)
P 		1783
avr 1381.2
(-0.8) 		755.4
(-2.9) 		716.7
(-3) 		2563.7
(3) 		1847

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 699
1 2 3 4 5 6 range
A 1088.5
(-0.3)
P 		1423.9
(2.9)
P 		1030.7
(-0.9)
P 		811.7
(-3)
P 		1436.6
(3)
P 		1347.6
(2.1)
P 		625
B 1460.4
(2.4)
P 		1085.5
(-2)
P 		997.8
(-3)
P 		1394.2
(1.6)
P 		1446.8
(2.3)
P 		1510.7
(3)
P 		513
C 1220.9
(-0)
P 		1115.6
(-2.7)
P 		1149.2
(-1.9)
P 		1104.1
(-3)
P 		1340.5
(3)
P 		1258.1
(0.9)
P 		236
avr 1256.6
(0.4) 		1208.3
(-0.4) 		1059.2
(-3) 		1103.3
(-2.2) 		1408
(3) 		1372.1
(2.4) 		349
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 427
1 2 3 4 range
A 581.7
(3)
P 		155.9
(-3)
P 		215
(-2.2)
P 		386
(0.2)
P 		426
B 365.2
(0.1)
P 		177.8
(-2.7)
P 		154.4
(-3)
P 		556.1
(3)
P 		402
C 463.7
(3)
P 		238.1
(-2.8)
P 		230.5
(-3)
P 		412.2
(1.7)
P 		233
avr 470.2
(3) 		190.6
(-3) 		200
(-2.8) 		451.4
(2.6) 		280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 387
1 2 3 4 5 6 range
A 200.7
(-3)
P 		506.4
(3)
P 		224.5
(-2.5)
P 		205.9
(-2.9)
P 		433.5
(1.6)
P 		328.1
(-0.5)
P 		306
B 508.1
(1.6)
P 		361.3
(-0.9)
P 		242.3
(-3)
P 		369.3
(-0.8)
P 		587.8
(3)
P 		563.3
(2.6)
P 		346
C 452.5
(3)
P 		340.4
(0.1)
P 		292.5
(-1.2)
P 		222
(-3)
P 		433.8
(2.5)
P 		421.1
(2.2)
P 		231
avr 387.1
(0.5) 		402.7
(0.9) 		253.1
(-3) 		265.7
(-2.7) 		485
(3) 		437.5
(1.8) 		232
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174265_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21949
Sequence Type Exemplar sequence
Representative Public ID C59032 NCBI
Target Description C59032_rc /REP_DB=TREMBL Accession /GB=C59032 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk387a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071767(10), NM_071768(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071767 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-9) (nlp-9) mRNA, complete cds. 10/11 A 
NM_071768 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-9) (nlp-9) mRNA, complete cds. 11/11 A 
E03D2.2a ENSEMBL cdna:known chromosome:CEL140:V:4219457:4221998:1 gene:E03D2.2 11/11 A 
E03D2.2b ENSEMBL cdna:known chromosome:CEL140:V:4219481:4221943:1 gene:E03D2.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024578 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4220510-4221933(+) 100.0 100.0
Public Domain and Genome References
Ensembl E03D2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94167 Neuropeptide-like protein protein 9, isoform a [Caenorhabditis elegans] ref|NP_504168.1| Neuropeptide-Like Protein family member (nlp-9) [Caenorhabditis elegans] 3.0E-71
blast AAK68290 Neuropeptide-like protein protein 9, isoform b [Caenorhabditis elegans] ref|NP_504169.1| Neuropeptide-Like Protein family member (nlp-9) [Caenorhabditis elegans] 4.0E-62
blast AAK68290 Neuropeptide-like protein protein 9, isoform b [Caenorhabditis elegans] ref|NP_504169.1| Neuropeptide-Like Protein family member (nlp-9) [Caenorhabditis elegans] 3.0E-59
blast AAB94167 Neuropeptide-like protein protein 9, isoform a [Caenorhabditis elegans] ref|NP_504168.1| Neuropeptide-Like Protein family member (nlp-9) [Caenorhabditis elegans] 3.0E-59
blast CAE58318 Hypothetical protein CBG01431 [Caenorhabditis briggsae] 3.0E-57
Sequence
Target Sequence 
>C. ELEGANS:174265_AT
cccgtacttggaacgcgacaactcatattactgactacgccagcctaccgtacgcctcca
cgtacctgctccttcgcctcgtcgccttcgttcttgctctccaatgatctatcgaccttt
aaccaccacgtatgattgacacaccaaattgaatctcagcgcacctttccaagaaccaaa
ttatttcatttttgagtttccctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCGTACTTGGAACGCGACAACTCA 104 261 39 Antisense
TACTTGGAACGCGACAACTCATATT 350 645 43 Antisense
CTCATATTACTGACTACGCCAGCCT 200 229 60 Antisense
TGCTCTCCAATGATCTATCGACCTT 468 581 133 Antisense
CAATGATCTATCGACCTTTAACCAC 176 183 140 Antisense
GACCTTTAACCACCACGTATGATTG 407 377 152 Antisense
CCACCACGTATGATTGACACACCAA 684 273 161 Antisense
GACACACCAAATTGAATCTCAGCGC 171 367 176 Antisense
CAAATTGAATCTCAGCGCACCTTTC 644 193 183 Antisense
GCGCACCTTTCCAAGAACCAAATTA 683 287 197 Antisense
TATTTCATTTTTGAGTTTCCCTAAT 311 661 220 Antisense
Sequence Source Affymetrix Proprietary Database