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[174264_at]

Description C52057_rc /REP_DB=TREMBL Accession /GB=C52057 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk226a1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 84      6grp_total > 99      4grp_total > 16      6grp_highest_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 521
1 2 3 4 range
A 544.1
(1.6)
P 		385.5
(-3)
P 		590.5
(3)
P 		499.7
(0.3)
P 		205
B 440.5
(-2.6)
P 		534
(-1.5)
P 		410.8
(-3)
P 		906.8
(3)
P 		496
C 497.2
(-3)
P 		654.9
(0.6)
P 		762.6
(3)
P 		687.8
(1.3)
P 		265
avr 493.9
(-3) 		524.8
(-2.1) 		588
(-0.2) 		698.1
(3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 728
1 2 3 4 5 6 range
A 586.1
(-1.1)
P 		594.5
(-1)
P 		511.8
(-1.9)
P 		430.9
(-2.8)
P 		961.5
(3)
P 		412.3
(-3)
P 		549
B 540.3
(-3)
P 		618.3
(-1.8)
P 		918
(3)
P 		674.1
(-0.9)
P 		702.1
(-0.4)
P 		797.7
(1.1)
P 		378
C 539.8
(-1.5)
P 		596.3
(-1)
P 		353
(-3)
P 		474.3
(-2)
P 		698.4
(-0.2)
P 		1080.6
(3)
P 		728
avr 555.4
(-2.3) 		603
(-1.2) 		594.3
(-1.4) 		526.4
(-3) 		787.3
(3) 		763.5
(2.5) 		261
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 198.1
(3)
P 		83.7
(-2.5)
P 		154.4
(0.9)
P 		73.1
(-3)
P 		125
B 140.5
(-0.2)
P 		131.9
(-0.8)
P 		95.2
(-3)
P 		193.2
(3)
P 		98
C 164.6
(-1.1)
P 		188.3
(-0.1)
P 		265.8
(3)
P 		116
(-3)
P 		150
avr 167.7
(2.4) 		134.6
(-2) 		171.8
(3) 		127.4
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 108
(-2.8)
P 		211.4
(0.5)
P 		111.5
(-2.6)
P 		109.3
(-2.7)
P 		290.1
(3)
P 		100.4
(-3)
P 		190
B 188
(-2.5)
P 		205.8
(-1.6)
P 		222.9
(-0.8)
P 		178.5
(-3)
P 		285.2
(2.4)
P 		297.4
(3)
P 		119
C 200.1
(-0.6)
P 		181.9
(-1)
P 		89.8
(-3)
P 		95.4
(-2.9)
P 		226
(0)
P 		361.7
(3)
P 		272
avr 165.4
(-1.4) 		199.7
(0.1) 		141.4
(-2.4) 		127.7
(-3) 		267.1
(3) 		253.2
(2.4) 		139
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20189
Sequence Type Exemplar sequence
Representative Public ID C52057 NCBI
Target Description C52057_rc /REP_DB=TREMBL Accession /GB=C52057 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk226a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C52057
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C52057 C52057_rc /REP_DB=TREMBL Accession /GB=C52057 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk226a1 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5714628-5714932(+) 100.0 100.0
chrI:5706495-5706799(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174264_AT
gtgttctttttcttcattatctttaatttcatcaaaattttgtttaaggattatctattt
tcggttttttactatcacttcaaaatcgataattagaatttttaataacaagcttttgga
aaataattgaaaaatattcataattgttcttattccctgtcataatctagttttctgtct
atttatggttgtgtttttgagatttctgaaattttctttgcatatcttttttaccaatct
cgtcctcttttcttttcggttgtgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTCTTTTTCTTCATTATCTTTA 575 485 19 Antisense
TCTTCATTATCTTTAATTTCATCAA 315 617 29 Antisense
GTTTTTTACTATCACTTCAAAATCG 44 449 82 Antisense
TCATAATTGTTCTTATTCCCTGTCA 17 621 156 Antisense
GTTCTTATTCCCTGTCATAATCTAG 632 441 164 Antisense
CCCTGTCATAATCTAGTTTTCTGTC 192 259 173 Antisense
GTTTTCTGTCTATTTATGGTTGTGT 149 449 188 Antisense
ATGGTTGTGTTTTTGAGATTTCTGA 507 49 203 Antisense
GAAATTTTCTTTGCATATCTTTTTT 521 363 226 Antisense
ATATCTTTTTTACCAATCTCGTCCT 558 17 240 Antisense
TCCTCTTTTCTTTTCGGTTGTGACA 363 591 261 Antisense
Sequence Source Affymetrix Proprietary Database