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[174263_at]

Description C54377_rc /REP_DB=TREMBL Accession /GB=C54377 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk357a9 : 3prime end, single read.
Cluster 6grp_total > 83      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 1.9
(-3)
A 		3.1
(-1.8)
A 		3.1
(-1.8)
A 		7.7
(3)
A 		6
B 1.8
(-3)
A 		4
(-2.3)
A 		20.3
(3)
A 		14.4
(1.1)
A 		19
C 2.7
(-2.9)
A 		27.1
(0.1)
A 		2.2
(-3)
A 		50.8
(3)
A 		49
avr 2.1
(-3) 		11.4
(-0.5) 		8.5
(-1.3) 		24.3
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 5.4
(-1.7)
A 		0.9
(-3)
A 		20.9
(3)
A 		0.9
(-3)
A 		17
(1.8)
A 		2.5
(-2.5)
A 		20
B 0.7
(-3)
A 		2.5
(-2.5)
A 		3.9
(-2.1)
A 		14.3
(0.8)
A 		22
(3)
A 		2.4
(-2.5)
A 		21
C 1.2
(-3)
A 		17.4
(3)
A 		10.4
(0.4)
A 		4.4
(-1.8)
A 		11.8
(0.9)
A 		2.4
(-2.6)
A 		16
avr 2.4
(-3) 		6.9
(-1.1) 		11.7
(0.8) 		6.5
(-1.3) 		16.9
(3) 		2.4
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.7
(-3)
A 		0.7
(-3)
A 		0.8
(-1.5)
A 		1.1
(3)
A 		0
B 0.6
(-3)
A 		1
(-2.4)
A 		4.7
(3)
A 		3.1
(0.7)
A 		4
C 0.9
(-2.9)
A 		7.8
(2.4)
A 		0.8
(-3)
A 		8.6
(3)
A 		8
avr 0.7
(-3) 		3.2
(1.2) 		2.1
(-0.7) 		4.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1
(-2)
A 		0.3
(-2.9)
A 		4.5
(2.3)
A 		0.2
(-3)
A 		5.1
(3)
A 		0.6
(-2.5)
A 		5
B 0.3
(-3)
A 		0.8
(-2.7)
A 		1
(-2.5)
A 		3.8
(-0.6)
A 		8.9
(3)
A 		0.9
(-2.6)
A 		9
C 0.4
(-3)
A 		5.3
(3)
A 		2.7
(-0.2)
A 		0.9
(-2.4)
A 		3.8
(1.2)
A 		0.8
(-2.5)
A 		5
avr 0.6
(-3) 		2.1
(-1.3) 		2.7
(-0.6) 		1.6
(-1.9) 		5.9
(3) 		0.8
(-2.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174263_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21837
Sequence Type Exemplar sequence
Representative Public ID C54377 NCBI
Target Description C54377_rc /REP_DB=TREMBL Accession /GB=C54377 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk357a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C54377
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C54377 C54377_rc /REP_DB=TREMBL Accession /GB=C54377 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk357a9 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12558896-12559176(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174263_AT
gtgttctttttacaacgattaatgatatcgaacttcagaacgatagatcattgaaacagt
gtaatctgatctttcaaacagaaaacaaacctttttagaagtagtttgaaaagttacaga
aaaggttaccatgcttttggtagattataacccgacaattggtggtactcaacaaaaaat
gtcacatttcgccatctttcaagcacaacaacttctgaatggctgatcaaaattttacta
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTCTTTTTACAACGATTAATGA 158 483 22 Antisense
CGAACTTCAGAACGATAGATCATTG 155 253 50 Antisense
ACAGTGTAATCTGATCTTTCAAACA 652 107 77 Antisense
CAGAAAAGGTTACCATGCTTTTGGT 666 203 138 Antisense
GCTTTTGGTAGATTATAACCCGACA 686 297 154 Antisense
TATAACCCGACAATTGGTGGTACTC 386 659 167 Antisense
AAATGTCACATTTCGCCATCTTTCA 25 121 198 Antisense
CATTTCGCCATCTTTCAAGCACAAC 507 215 206 Antisense
GCCATCTTTCAAGCACAACAACTTC 9 281 212 Antisense
GCACAACAACTTCTGAATGGCTGAT 605 317 224 Antisense
GAATGGCTGATCAAAATTTTACTAT 361 333 238 Antisense
Sequence Source Affymetrix Proprietary Database